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The map label for this gene is exbD [H]

Identifier: 120611969

GI number: 120611969

Start: 3664569

End: 3664976

Strand: Direct

Name: exbD [H]

Synonym: Aave_3313

Alternate gene names: 120611969

Gene position: 3664569-3664976 (Clockwise)

Preceding gene: 120611968

Following gene: 120611970

Centisome position: 68.46

GC content: 65.93

Gene sequence:

>408_bases
ATGGCATTCGGAACCCAGGACGACGCCGACGAGGTGATGAACGAGATCAACATGACGCCCCTGGTGGACGTCATGCTGGT
GCTGCTCATCATCTTCATCATCACCGTGCCCGTCATGAAGCATGCCGTGCCGGTGGACCTGCCGCGCGCCTCCGCCGAGC
GCGAGAACGTCAAGCCCGAGACCATCCGCCTCAGCGTCACGGCCGACGGCAAGTACCACTGGAACGAGACCGACATCGGC
GACGAGGAGCTGGAGCCCCGCCTGAAGGCCGAGGCTGCCAAGGACCCGCAGCCCGATCTGCACATCCGCGGCGACAAGGA
AGTGCGCTATGAACGCGTGGCCCAGGCCATGGCGGCCGCGCAGCGCGCCGGCGTTCGCAAGATCGGCTTCGTCACCGATC
CGCAGTGA

Upstream 100 bases:

>100_bases
CTTCGCGCATGACCTGCACGCCTACTTCGTGACCGGCGCCCGCGTCAGCGCCCCTGCCGACCAGGGCAAGGTCCTGCCCA
TCAAGAAAGGCTGACGCGCC

Downstream 100 bases:

>100_bases
GGCAACAAATACTTGCAATAAAGCCGGGGCCGGCCTTGACGCTCAATTGAGAATGGTTATCATTAATTCATTGCCAACGC
ACCGAGGATCCGAAACCATG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAFGTQDDADEVMNEINMTPLVDVMLVLLIIFIITVPVMKHAVPVDLPRASAERENVKPETIRLSVTADGKYHWNETDIG
DEELEPRLKAEAAKDPQPDLHIRGDKEVRYERVAQAMAAAQRAGVRKIGFVTDPQ

Sequences:

>Translated_135_residues
MAFGTQDDADEVMNEINMTPLVDVMLVLLIIFIITVPVMKHAVPVDLPRASAERENVKPETIRLSVTADGKYHWNETDIG
DEELEPRLKAEAAKDPQPDLHIRGDKEVRYERVAQAMAAAQRAGVRKIGFVTDPQ
>Mature_134_residues
AFGTQDDADEVMNEINMTPLVDVMLVLLIIFIITVPVMKHAVPVDLPRASAERENVKPETIRLSVTADGKYHWNETDIGD
EELEPRLKAEAAKDPQPDLHIRGDKEVRYERVAQAMAAAQRAGVRKIGFVTDPQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=38.8888888888889, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15090; Mature: 14959

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGTQDDADEVMNEINMTPLVDVMLVLLIIFIITVPVMKHAVPVDLPRASAERENVKPE
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCC
TIRLSVTADGKYHWNETDIGDEELEPRLKAEAAKDPQPDLHIRGDKEVRYERVAQAMAAA
EEEEEEEECCEEECCCCCCCHHHHCCHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHH
QRAGVRKIGFVTDPQ
HHCCCEECCCCCCCC
>Mature Secondary Structure 
AFGTQDDADEVMNEINMTPLVDVMLVLLIIFIITVPVMKHAVPVDLPRASAERENVKPE
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCC
TIRLSVTADGKYHWNETDIGDEELEPRLKAEAAKDPQPDLHIRGDKEVRYERVAQAMAAA
EEEEEEEECCEEECCCCCCCHHHHCCHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHH
QRAGVRKIGFVTDPQ
HHCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]