Click here to switch to the map view.

The map label for this gene is rmuC [H]

Identifier: 120611960

GI number: 120611960

Start: 3655055

End: 3656479

Strand: Reverse

Name: rmuC [H]

Synonym: Aave_3304

Alternate gene names: 120611960

Gene position: 3656479-3655055 (Counterclockwise)

Preceding gene: 120611961

Following gene: 120611959

Centisome position: 68.31

GC content: 70.95

Gene sequence:

>1425_bases
ATGTCGATTGAATGGCTGGCGGTGTTCGCGTTGCTCGCGCTCATCACCGTGCTCCTGGGGGTGCTGCTGCTGCGCAGCCC
CCGACCCGAGCTTCCACCCGAATGGGCCATGCGGCTGCAGCGCCTGGAGCAGGTGGCCCAGGCGACCCAACTGGCCGTGG
CGAAGAACGACGGCGCGCTGGAAGGCATGGCCCAGCAGTTGCGCGGTTTCACGCAGGCCACGCACGCGCACCTGGAGGGC
CAGCGGGAGGTGCTGGACGAACGGCTCGCGCAGGCGGTGCACGATGCCCGTTCGGGCCGCGCGGAACTGCGTGAAGGCTT
CGACGCCTTCGAGGCCAGGCTGGGGCAGCGGATGGCCCAGGCGCAGGCCGATGCCGCCGTGGCCCGCCGCGAACTGGCGG
ATGCCCTGGGCGCCTTCCGCGCCGAGCTGACGCAGACCTCGGAATCGCTGCGCGCCGCGCTGCACGAGCGCCTCGCGGCC
ATCCAGTCGGACAACGCGGCCCGTCTGGAGGAGATGCGCCGCACCGTGGACGAGAAACTGCACGCCACGCTGGAGCAGCG
GCTGGGCGAGTCGTTCAGGATGGTGAGCGACCGGCTCGAGCAGGTGCACCGCGGCCTGGGCGAGATGCAGACGCTGGCCG
CCAGCGTGGGCGACCTCAAGCGCGTGATGACCAACGTGAAGACGCGCGGCACCTGGGGCGAACTGCAGCTGGGCGCCATC
ATCGAGAACGTGCTGGCGCCGGAGCAGTACGCACGCAACGTGAAGACGGTGCCGGGCAGCGACGAACTGGTGGAGTTCGC
CATCCGCCTGCCGGGGCGGGGCCAGGAGGAGCCGGTCTGGCTGCCCATCGACGCGAAGTTCCCGGTGGAGTCCTACCAGC
GCCTGCTGGACGCGCACGACGCGGCGGACAAGGCGGCCGTCCTCGCGGCGGGCAACGCGCTGGAGGCCGCGGTTCGCTTC
GAGGCGCGCAAGATCGCCGCCAAGTATGTGTCGCCGCCGCACACGACCGATTTCGCGGTGCTGTACCTGCCCACCGAAGG
GCTGTTCGCCGAGGTGGTCCGCCGTCCGGGCCTCGTGGAGGCGCTGCAGGGCGAATGCCGGGTGATGGTGGCAGGGCCCG
CGAACCTCGCGGCGATGCTCAGCAGCCTGCAGATGGGTTTCAAGACGCTGGCGATCGAGAAGCGGTCTTCCGAGGTGTGG
GGGCTGCTGGGCGCGGTGAAGACGGAATTCGCCAAGTTCGGCGATGTGGTGGAGGCCACGCGCAAGTCGATCGATGCCGC
GGCCAAGCGGTTCGACGAGGTGGGGGTGCGCACGCGCGCCATCCAGCGGCGGCTGCGGGACGTGCAGGAGCTGCCCGCCG
CGCAGGAGGACTCGGCCGCGTCGCTGGGTGCGCCCGTGGATTCCGGGACGCAGGGGCAGGTCTGA

Upstream 100 bases:

>100_bases
CGCGCTCACGCCCGTGAACACGCCCCGGCCCCGTTGAGGGCCGCTCCATCGCCCGCCGGTCCCCGGGGCCGGCAGTTGAC
AACGAAACGTCTGGATTGGC

Downstream 100 bases:

>100_bases
GATGGACGGGGCGCTCGCACGGCTGATCGCCGGCCAGGTATGCATCCACGCCAGCATGACGGGCATGCGCCTCGCGGCCC
CGCTGCTGGCGCTGCGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSIEWLAVFALLALITVLLGVLLLRSPRPELPPEWAMRLQRLEQVAQATQLAVAKNDGALEGMAQQLRGFTQATHAHLEG
QREVLDERLAQAVHDARSGRAELREGFDAFEARLGQRMAQAQADAAVARRELADALGAFRAELTQTSESLRAALHERLAA
IQSDNAARLEEMRRTVDEKLHATLEQRLGESFRMVSDRLEQVHRGLGEMQTLAASVGDLKRVMTNVKTRGTWGELQLGAI
IENVLAPEQYARNVKTVPGSDELVEFAIRLPGRGQEEPVWLPIDAKFPVESYQRLLDAHDAADKAAVLAAGNALEAAVRF
EARKIAAKYVSPPHTTDFAVLYLPTEGLFAEVVRRPGLVEALQGECRVMVAGPANLAAMLSSLQMGFKTLAIEKRSSEVW
GLLGAVKTEFAKFGDVVEATRKSIDAAAKRFDEVGVRTRAIQRRLRDVQELPAAQEDSAASLGAPVDSGTQGQV

Sequences:

>Translated_474_residues
MSIEWLAVFALLALITVLLGVLLLRSPRPELPPEWAMRLQRLEQVAQATQLAVAKNDGALEGMAQQLRGFTQATHAHLEG
QREVLDERLAQAVHDARSGRAELREGFDAFEARLGQRMAQAQADAAVARRELADALGAFRAELTQTSESLRAALHERLAA
IQSDNAARLEEMRRTVDEKLHATLEQRLGESFRMVSDRLEQVHRGLGEMQTLAASVGDLKRVMTNVKTRGTWGELQLGAI
IENVLAPEQYARNVKTVPGSDELVEFAIRLPGRGQEEPVWLPIDAKFPVESYQRLLDAHDAADKAAVLAAGNALEAAVRF
EARKIAAKYVSPPHTTDFAVLYLPTEGLFAEVVRRPGLVEALQGECRVMVAGPANLAAMLSSLQMGFKTLAIEKRSSEVW
GLLGAVKTEFAKFGDVVEATRKSIDAAAKRFDEVGVRTRAIQRRLRDVQELPAAQEDSAASLGAPVDSGTQGQV
>Mature_473_residues
SIEWLAVFALLALITVLLGVLLLRSPRPELPPEWAMRLQRLEQVAQATQLAVAKNDGALEGMAQQLRGFTQATHAHLEGQ
REVLDERLAQAVHDARSGRAELREGFDAFEARLGQRMAQAQADAAVARRELADALGAFRAELTQTSESLRAALHERLAAI
QSDNAARLEEMRRTVDEKLHATLEQRLGESFRMVSDRLEQVHRGLGEMQTLAASVGDLKRVMTNVKTRGTWGELQLGAII
ENVLAPEQYARNVKTVPGSDELVEFAIRLPGRGQEEPVWLPIDAKFPVESYQRLLDAHDAADKAAVLAAGNALEAAVRFE
ARKIAAKYVSPPHTTDFAVLYLPTEGLFAEVVRRPGLVEALQGECRVMVAGPANLAAMLSSLQMGFKTLAIEKRSSEVWG
LLGAVKTEFAKFGDVVEATRKSIDAAAKRFDEVGVRTRAIQRRLRDVQELPAAQEDSAASLGAPVDSGTQGQV

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 51810; Mature: 51679

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEWLAVFALLALITVLLGVLLLRSPRPELPPEWAMRLQRLEQVAQATQLAVAKNDGAL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EGMAQQLRGFTQATHAHLEGQREVLDERLAQAVHDARSGRAELREGFDAFEARLGQRMAQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AQADAAVARRELADALGAFRAELTQTSESLRAALHERLAAIQSDNAARLEEMRRTVDEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HATLEQRLGESFRMVSDRLEQVHRGLGEMQTLAASVGDLKRVMTNVKTRGTWGELQLGAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IENVLAPEQYARNVKTVPGSDELVEFAIRLPGRGQEEPVWLPIDAKFPVESYQRLLDAHD
HHHHHCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
AADKAAVLAAGNALEAAVRFEARKIAAKYVSPPHTTDFAVLYLPTEGLFAEVVRRPGLVE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCHHH
ALQGECRVMVAGPANLAAMLSSLQMGFKTLAIEKRSSEVWGLLGAVKTEFAKFGDVVEAT
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKSIDAAAKRFDEVGVRTRAIQRRLRDVQELPAAQEDSAASLGAPVDSGTQGQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIEWLAVFALLALITVLLGVLLLRSPRPELPPEWAMRLQRLEQVAQATQLAVAKNDGAL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EGMAQQLRGFTQATHAHLEGQREVLDERLAQAVHDARSGRAELREGFDAFEARLGQRMAQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AQADAAVARRELADALGAFRAELTQTSESLRAALHERLAAIQSDNAARLEEMRRTVDEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HATLEQRLGESFRMVSDRLEQVHRGLGEMQTLAASVGDLKRVMTNVKTRGTWGELQLGAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IENVLAPEQYARNVKTVPGSDELVEFAIRLPGRGQEEPVWLPIDAKFPVESYQRLLDAHD
HHHHHCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
AADKAAVLAAGNALEAAVRFEARKIAAKYVSPPHTTDFAVLYLPTEGLFAEVVRRPGLVE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCHHH
ALQGECRVMVAGPANLAAMLSSLQMGFKTLAIEKRSSEVWGLLGAVKTEFAKFGDVVEAT
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKSIDAAAKRFDEVGVRTRAIQRRLRDVQELPAAQEDSAASLGAPVDSGTQGQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]