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The map label for this gene is sodC [H]

Identifier: 120611267

GI number: 120611267

Start: 2846873

End: 2847592

Strand: Reverse

Name: sodC [H]

Synonym: Aave_2599

Alternate gene names: 120611267

Gene position: 2847592-2846873 (Counterclockwise)

Preceding gene: 120611268

Following gene: 120611266

Centisome position: 53.2

GC content: 73.33

Gene sequence:

>720_bases
ATGATCCTGAACCTGTTCCACCCGACCGCATCTTCCTTCCGCCTCCTGCGCCCGGCCTCCGCGCTGGCGGCTGCGGGCGC
CGCGCTCGCCCTCGCCGGCTGCGGCGCCCAGGGCCCGGGCAAGGCGCAGGGCGCGCCCGCGCCCCATGCGGTGGAGGCCG
CCGGCAGCGCCACGAAAATGCCGGTACCCGGCCCGGAGCGGGCCACGGCTTCCGCCCGCCTGATGACAGCGAGCGGCCAG
CCGGCCGGCACGGCCGTGCTGACCGAGACTCCCAGCGGCGTGGAGATCGTCGCGCAGGTGCAGGGCCTGACGGCCGGCCT
GCATGGCTTCCACATCCACGCCAATGGCCAATGCGACCCCGGTCCGGACGCCGCCACCGGCAAGACCGTCCCCTTCGGCG
CGGCCGGCGGCCATTTCGACCCGGGCATGTCCCACCAGCACGGCCAGCCAGGAGCGCCCATCGACAAGGCCCATGCCGGC
GAACTGCCCAACATCAGCGTCGGCGCGGACGGCCGCGGCACGGTGCGTTACCTGAACACCAACGTCACGCTCACGCCGGG
CAAGGCCTCCATCATGGGCCGCGCCCTCGTGGTGCACGAGAAGGAAGACGACTACAAGAGCAATCCGGCCGGCAACTCCG
GTGGCCGCGTCCTGTGCGGCGTGATCGAGCCGGCGCAGCCCAGCAGCGTGGTTGGCCAGGCCCCGTCGCCACGCAGCTGA

Upstream 100 bases:

>100_bases
GGCGGTTGTCCTACGCGACGGGCAGGCATCGCGCCGCATGCTCATCGGGTACCGCGACCCTGCATCGCAGGGTCTTTGTC
CTTCACTCCGACTGCCGATC

Downstream 100 bases:

>100_bases
TCCGCATGCGCGGCGTGCCCCCTCCCCCAGGCCGCGCGGCCCCCTCCCCTCCGCCATCCGCCCCCTCCGGCCCTGCCGCC
GCCCGCGCTTCGGCGCCGGT

Product: superoxide dismutase, copper/zinc-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MILNLFHPTASSFRLLRPASALAAAGAALALAGCGAQGPGKAQGAPAPHAVEAAGSATKMPVPGPERATASARLMTASGQ
PAGTAVLTETPSGVEIVAQVQGLTAGLHGFHIHANGQCDPGPDAATGKTVPFGAAGGHFDPGMSHQHGQPGAPIDKAHAG
ELPNISVGADGRGTVRYLNTNVTLTPGKASIMGRALVVHEKEDDYKSNPAGNSGGRVLCGVIEPAQPSSVVGQAPSPRS

Sequences:

>Translated_239_residues
MILNLFHPTASSFRLLRPASALAAAGAALALAGCGAQGPGKAQGAPAPHAVEAAGSATKMPVPGPERATASARLMTASGQ
PAGTAVLTETPSGVEIVAQVQGLTAGLHGFHIHANGQCDPGPDAATGKTVPFGAAGGHFDPGMSHQHGQPGAPIDKAHAG
ELPNISVGADGRGTVRYLNTNVTLTPGKASIMGRALVVHEKEDDYKSNPAGNSGGRVLCGVIEPAQPSSVVGQAPSPRS
>Mature_239_residues
MILNLFHPTASSFRLLRPASALAAAGAALALAGCGAQGPGKAQGAPAPHAVEAAGSATKMPVPGPERATASARLMTASGQ
PAGTAVLTETPSGVEIVAQVQGLTAGLHGFHIHANGQCDPGPDAATGKTVPFGAAGGHFDPGMSHQHGQPGAPIDKAHAG
ELPNISVGADGRGTVRYLNTNVTLTPGKASIMGRALVVHEKEDDYKSNPAGNSGGRVLCGVIEPAQPSSVVGQAPSPRS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=167, Percent_Identity=35.9281437125749, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4826665, Length=144, Percent_Identity=34.0277777777778, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI1787934, Length=150, Percent_Identity=36, Blast_Score=76, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71981876, Length=172, Percent_Identity=36.046511627907, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71981879, Length=172, Percent_Identity=36.046511627907, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=151, Percent_Identity=36.4238410596026, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17537871, Length=138, Percent_Identity=36.231884057971, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007680, Length=151, Percent_Identity=37.0860927152318, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI85725006, Length=151, Percent_Identity=37.0860927152318, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI45551081, Length=151, Percent_Identity=37.0860927152318, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24652737, Length=151, Percent_Identity=37.0860927152318, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI17136496, Length=163, Percent_Identity=35.5828220858896, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281363087, Length=126, Percent_Identity=34.9206349206349, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24652342, Length=126, Percent_Identity=34.9206349206349, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23653; Mature: 23653

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNLFHPTASSFRLLRPASALAAAGAALALAGCGAQGPGKAQGAPAPHAVEAAGSATKM
CEEEEECCCCCCEEEECCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHCCCCCCCC
PVPGPERATASARLMTASGQPAGTAVLTETPSGVEIVAQVQGLTAGLHGFHIHANGQCDP
CCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCEECCEEEEEEECCCCCC
GPDAATGKTVPFGAAGGHFDPGMSHQHGQPGAPIDKAHAGELPNISVGADGRGTVRYLNT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC
NVTLTPGKASIMGRALVVHEKEDDYKSNPAGNSGGRVLCGVIEPAQPSSVVGQAPSPRS
CEEECCCCHHHCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHCCCCCCCCC
>Mature Secondary Structure
MILNLFHPTASSFRLLRPASALAAAGAALALAGCGAQGPGKAQGAPAPHAVEAAGSATKM
CEEEEECCCCCCEEEECCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHCCCCCCCC
PVPGPERATASARLMTASGQPAGTAVLTETPSGVEIVAQVQGLTAGLHGFHIHANGQCDP
CCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCEECCEEEEEEECCCCCC
GPDAATGKTVPFGAAGGHFDPGMSHQHGQPGAPIDKAHAGELPNISVGADGRGTVRYLNT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC
NVTLTPGKASIMGRALVVHEKEDDYKSNPAGNSGGRVLCGVIEPAQPSSVVGQAPSPRS
CEEECCCCHHHCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]