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The map label for this gene is yncD [H]

Identifier: 120611266

GI number: 120611266

Start: 2844696

End: 2846867

Strand: Reverse

Name: yncD [H]

Synonym: Aave_2598

Alternate gene names: 120611266

Gene position: 2846867-2844696 (Counterclockwise)

Preceding gene: 120611267

Following gene: 120611257

Centisome position: 53.18

GC content: 74.22

Gene sequence:

>2172_bases
ATGCGCGGCGTGCCCCCTCCCCCAGGCCGCGCGGCCCCCTCCCCTCCGCCATCCGCCCCCTCCGGCCCTGCCGCCGCCCG
CGCTTCGGCGCCGGTCTGGGCGGTCGTGGCCGGCTGCGCCCTGTGGGCGGGCATCCCGCCGGAAGCGGTGGCCCAGGCCG
CCGGCCCCGATCCCGAGCTGCCGGCCGTCGAAGTGTCCGGCGGCCAGGCGGCCGCCCAGCGCCGCTTCGATGCCGCCGCG
AGCCATACGGCCATCTCCCTGGACCCCTTCACGGCCACCACACCGCTCGTGAACCTGTCCGAACTGCTGGCCGGCCAGCC
CGGCGTGGCGGTGTCCGACCGCCAGAACTACGCGCAGGATCTCCAGATCGCGGTGCGAGGCTTCGGGTCGCGCTCCACGT
TCGGCGTGCGGGGCGTGCGCATCCTCGTGGACGGCATCCCGGCCACGATGCCGGACGGCCAGGGCCAGGCCGCCACGGCA
CAGCTGCCGTCCGCGTCCCAGGTGGAAGTGCTTCGCGGGCCGCTCGCCCAGCAGTACGGCAATGCGGCGGGCGGCGTGCT
GCAGGTCACCACGCGCGATCCGCGGGAAGGCGGCGGGGCTTCGGCCTCGGTGGCCGCGGGATCCTACGGCCAGCGCATGG
CCGAGGCATCGTTCGACGCGGGCGACCGCATCCTGGGCGGGCTGGTGGACATCTCCCGCTTCGAGACCGACGGCTGGCGG
GACCACGGCGCCGCCCGCCGCACGCACCTGAACGCCAAGGTCGTGGCACGTCCCTCTGGCGACACCCGCGTCACGGTGCT
GATGAACCTGTTCGACCAGCCGCTGGCGCAGGACCCGCTGGGCCTGACGCGCGAGCAGTGGCGGGCCGATCCCCGCCAGG
CCCCGGCGGTGGCGTACAGCTTCGACACCCGCAAGACCGTGCGGCAGAACCAGCTCGGCCTGGTGGTGGAGCACGCGCTG
AACGCCACGGACAGCGTGCGCGCAAGGCTCTACGGCGGCATCCGCAGCCTGTTCCAGACCCTGTCCTTCTCCGGCGCGGC
CGCCAGCAGCGCCGGCGGCGTGGTGGACCTGGACCGCGACTACTACGGCCTCGGAGCCGCCTGGACGCACAGCGACCGCA
CGGCCGCCGGCCTGCCCTGGTCCTGGACGGTGGGGTTGGACGCCGACCGGCTCTCCGAACACCGCCAGGGCTTCGTCAAC
GATGCGGGCGTGCCCGGCGCGCTGCGGCGCGACGAGCAGGACCGCGCCGGCAACACCGACCTCTTCGCCCAGGTGGACGC
CTGGATCGCCCCCACCGTGCGCGCGATCGCGGGGCTGCGCGCGACGCGGGTCCGGCTGGCCGTGGACGACCGCTTTCCGG
CCAGCGCCGCCAATCCGGACGACAGCGGCGAGCGCACCTGGCGTGGCACGAGCCCGGCCGTGGGCCTGGTCTGGGCCGCT
TCGGAGCACTTGAACCTGTATGCCAATGCCGGCGGAGGCATCGAAACGCCCACGCTGGCCGAGATGGCCTACAGCCGCAC
CAACAGCGGACCGAACTACGGGCTGGAGGCCGCGCGCAACCGCCAGTTCGAGGTGGGCGCCAAGTGGCAGGACGGGGTGC
ACCGCCTGGAGGCCGCCTGGTTCGATGCCCGCACGCGCGGAGAGATCGTTCCCGCGGCAACCGTCAATGGCCGCACGGTG
TACCAGAATGCCGACCGCGTGCGCCGCCGCGGCATGGAGCTGGGCTGGAGCGCGCGCATGGGCGCATTCGTCCCGCGGGC
CGCCTACACCTACCTGGACGCCTTCTTCGCCAGTCCCTATACCGGCGCGGGCGGCGTGGCGGTGCCTTCCGGCAACCGCC
TGCCGGGAACGGCGCGCCACACGGCCCGCCTGTCGCTGGATTACGCGCCCGACGCACGGTGGACGCTGGGCGGCGCGGTG
GACTTCTCCTCCCGGGTGCAGGCCAACGACGCCAACACCGAGGCGGCTCCCGGCCGTGCCGTCGCCGGACTGCACGCGGG
CTACGGATGGAAGACCGGAGGCACCGTGCGCTGGCAGGCCTGGGCGCGGCTGGACAACCTGTTCGACCGCCGCTATGCAG
GCTCGCTGATCGTCAACGACGGCAACGGCCGCTTCTTCGAGCCCGCGGCCGGCCGGCGCATCATGGTGGGGCTGCGCGCG
CAGCTGCCCTGA

Upstream 100 bases:

>100_bases
CGGCCGGCAACTCCGGTGGCCGCGTCCTGTGCGGCGTGATCGAGCCGGCGCAGCCCAGCAGCGTGGTTGGCCAGGCCCCG
TCGCCACGCAGCTGATCCGC

Downstream 100 bases:

>100_bases
CTTCAGTCCACCTTCACGTTCGCGGCCTTGATGACCTGGGCCCATTTCTCGACCTCGGCCTTCTGGAAGGCCGCGATCCG
GGCGGTGGACAGGTCCGCCG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 723; Mature: 723

Protein sequence:

>723_residues
MRGVPPPPGRAAPSPPPSAPSGPAAARASAPVWAVVAGCALWAGIPPEAVAQAAGPDPELPAVEVSGGQAAAQRRFDAAA
SHTAISLDPFTATTPLVNLSELLAGQPGVAVSDRQNYAQDLQIAVRGFGSRSTFGVRGVRILVDGIPATMPDGQGQAATA
QLPSASQVEVLRGPLAQQYGNAAGGVLQVTTRDPREGGGASASVAAGSYGQRMAEASFDAGDRILGGLVDISRFETDGWR
DHGAARRTHLNAKVVARPSGDTRVTVLMNLFDQPLAQDPLGLTREQWRADPRQAPAVAYSFDTRKTVRQNQLGLVVEHAL
NATDSVRARLYGGIRSLFQTLSFSGAAASSAGGVVDLDRDYYGLGAAWTHSDRTAAGLPWSWTVGLDADRLSEHRQGFVN
DAGVPGALRRDEQDRAGNTDLFAQVDAWIAPTVRAIAGLRATRVRLAVDDRFPASAANPDDSGERTWRGTSPAVGLVWAA
SEHLNLYANAGGGIETPTLAEMAYSRTNSGPNYGLEAARNRQFEVGAKWQDGVHRLEAAWFDARTRGEIVPAATVNGRTV
YQNADRVRRRGMELGWSARMGAFVPRAAYTYLDAFFASPYTGAGGVAVPSGNRLPGTARHTARLSLDYAPDARWTLGGAV
DFSSRVQANDANTEAAPGRAVAGLHAGYGWKTGGTVRWQAWARLDNLFDRRYAGSLIVNDGNGRFFEPAAGRRIMVGLRA
QLP

Sequences:

>Translated_723_residues
MRGVPPPPGRAAPSPPPSAPSGPAAARASAPVWAVVAGCALWAGIPPEAVAQAAGPDPELPAVEVSGGQAAAQRRFDAAA
SHTAISLDPFTATTPLVNLSELLAGQPGVAVSDRQNYAQDLQIAVRGFGSRSTFGVRGVRILVDGIPATMPDGQGQAATA
QLPSASQVEVLRGPLAQQYGNAAGGVLQVTTRDPREGGGASASVAAGSYGQRMAEASFDAGDRILGGLVDISRFETDGWR
DHGAARRTHLNAKVVARPSGDTRVTVLMNLFDQPLAQDPLGLTREQWRADPRQAPAVAYSFDTRKTVRQNQLGLVVEHAL
NATDSVRARLYGGIRSLFQTLSFSGAAASSAGGVVDLDRDYYGLGAAWTHSDRTAAGLPWSWTVGLDADRLSEHRQGFVN
DAGVPGALRRDEQDRAGNTDLFAQVDAWIAPTVRAIAGLRATRVRLAVDDRFPASAANPDDSGERTWRGTSPAVGLVWAA
SEHLNLYANAGGGIETPTLAEMAYSRTNSGPNYGLEAARNRQFEVGAKWQDGVHRLEAAWFDARTRGEIVPAATVNGRTV
YQNADRVRRRGMELGWSARMGAFVPRAAYTYLDAFFASPYTGAGGVAVPSGNRLPGTARHTARLSLDYAPDARWTLGGAV
DFSSRVQANDANTEAAPGRAVAGLHAGYGWKTGGTVRWQAWARLDNLFDRRYAGSLIVNDGNGRFFEPAAGRRIMVGLRA
QLP
>Mature_723_residues
MRGVPPPPGRAAPSPPPSAPSGPAAARASAPVWAVVAGCALWAGIPPEAVAQAAGPDPELPAVEVSGGQAAAQRRFDAAA
SHTAISLDPFTATTPLVNLSELLAGQPGVAVSDRQNYAQDLQIAVRGFGSRSTFGVRGVRILVDGIPATMPDGQGQAATA
QLPSASQVEVLRGPLAQQYGNAAGGVLQVTTRDPREGGGASASVAAGSYGQRMAEASFDAGDRILGGLVDISRFETDGWR
DHGAARRTHLNAKVVARPSGDTRVTVLMNLFDQPLAQDPLGLTREQWRADPRQAPAVAYSFDTRKTVRQNQLGLVVEHAL
NATDSVRARLYGGIRSLFQTLSFSGAAASSAGGVVDLDRDYYGLGAAWTHSDRTAAGLPWSWTVGLDADRLSEHRQGFVN
DAGVPGALRRDEQDRAGNTDLFAQVDAWIAPTVRAIAGLRATRVRLAVDDRFPASAANPDDSGERTWRGTSPAVGLVWAA
SEHLNLYANAGGGIETPTLAEMAYSRTNSGPNYGLEAARNRQFEVGAKWQDGVHRLEAAWFDARTRGEIVPAATVNGRTV
YQNADRVRRRGMELGWSARMGAFVPRAAYTYLDAFFASPYTGAGGVAVPSGNRLPGTARHTARLSLDYAPDARWTLGGAV
DFSSRVQANDANTEAAPGRAVAGLHAGYGWKTGGTVRWQAWARLDNLFDRRYAGSLIVNDGNGRFFEPAAGRRIMVGLRA
QLP

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=663, Percent_Identity=39.6681749622926, Blast_Score=441, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76378; Mature: 76378

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGVPPPPGRAAPSPPPSAPSGPAAARASAPVWAVVAGCALWAGIPPEAVAQAAGPDPEL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
PAVEVSGGQAAAQRRFDAAASHTAISLDPFTATTPLVNLSELLAGQPGVAVSDRQNYAQD
CEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCCCCCEECCHHHHHHH
LQIAVRGFGSRSTFGVRGVRILVDGIPATMPDGQGQAATAQLPSASQVEVLRGPLAQQYG
HHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC
NAAGGVLQVTTRDPREGGGASASVAAGSYGQRMAEASFDAGDRILGGLVDISRFETDGWR
CCCCCEEEEEECCCCCCCCCCCEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
DHGAARRTHLNAKVVARPSGDTRVTVLMNLFDQPLAQDPLGLTREQWRADPRQAPAVAYS
CCCCHHHEECCEEEEECCCCCCEEEEEEHHHCCCCCCCCCCCCHHHHCCCCCCCCEEEEE
FDTRKTVRQNQLGLVVEHALNATDSVRARLYGGIRSLFQTLSFSGAAASSAGGVVDLDRD
CCCHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC
YYGLGAAWTHSDRTAAGLPWSWTVGLDADRLSEHRQGFVNDAGVPGALRRDEQDRAGNTD
CCCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHCCCCHHCCCCCC
LFAQVDAWIAPTVRAIAGLRATRVRLAVDDRFPASAANPDDSGERTWRGTSPAVGLVWAA
EEEEHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
SEHLNLYANAGGGIETPTLAEMAYSRTNSGPNYGLEAARNRQFEVGAKWQDGVHRLEAAW
CCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCEEECCCHHHHHHHHHHHH
FDARTRGEIVPAATVNGRTVYQNADRVRRRGMELGWSARMGAFVPRAAYTYLDAFFASPY
HCCCCCCCEEEEEECCCCEEECCHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCC
TGAGGVAVPSGNRLPGTARHTARLSLDYAPDARWTLGGAVDFSSRVQANDANTEAAPGRA
CCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCEEECCEECCCCCEECCCCCCCCCCCCE
VAGLHAGYGWKTGGTVRWQAWARLDNLFDRRYAGSLIVNDGNGRFFEPAAGRRIMVGLRA
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCEEEEEEEC
QLP
CCC
>Mature Secondary Structure
MRGVPPPPGRAAPSPPPSAPSGPAAARASAPVWAVVAGCALWAGIPPEAVAQAAGPDPEL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
PAVEVSGGQAAAQRRFDAAASHTAISLDPFTATTPLVNLSELLAGQPGVAVSDRQNYAQD
CEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCCCCCEECCHHHHHHH
LQIAVRGFGSRSTFGVRGVRILVDGIPATMPDGQGQAATAQLPSASQVEVLRGPLAQQYG
HHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC
NAAGGVLQVTTRDPREGGGASASVAAGSYGQRMAEASFDAGDRILGGLVDISRFETDGWR
CCCCCEEEEEECCCCCCCCCCCEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
DHGAARRTHLNAKVVARPSGDTRVTVLMNLFDQPLAQDPLGLTREQWRADPRQAPAVAYS
CCCCHHHEECCEEEEECCCCCCEEEEEEHHHCCCCCCCCCCCCHHHHCCCCCCCCEEEEE
FDTRKTVRQNQLGLVVEHALNATDSVRARLYGGIRSLFQTLSFSGAAASSAGGVVDLDRD
CCCHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC
YYGLGAAWTHSDRTAAGLPWSWTVGLDADRLSEHRQGFVNDAGVPGALRRDEQDRAGNTD
CCCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHCCCCHHCCCCCC
LFAQVDAWIAPTVRAIAGLRATRVRLAVDDRFPASAANPDDSGERTWRGTSPAVGLVWAA
EEEEHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
SEHLNLYANAGGGIETPTLAEMAYSRTNSGPNYGLEAARNRQFEVGAKWQDGVHRLEAAW
CCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCEEECCCHHHHHHHHHHHH
FDARTRGEIVPAATVNGRTVYQNADRVRRRGMELGWSARMGAFVPRAAYTYLDAFFASPY
HCCCCCCCEEEEEECCCCEEECCHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCC
TGAGGVAVPSGNRLPGTARHTARLSLDYAPDARWTLGGAVDFSSRVQANDANTEAAPGRA
CCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCEEECCEECCCCCEECCCCCCCCCCCCE
VAGLHAGYGWKTGGTVRWQAWARLDNLFDRRYAGSLIVNDGNGRFFEPAAGRRIMVGLRA
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCEEEEEEEC
QLP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]