Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is icd [H]
Identifier: 120611240
GI number: 120611240
Start: 2821485
End: 2822744
Strand: Direct
Name: icd [H]
Synonym: Aave_2572
Alternate gene names: 120611240
Gene position: 2821485-2822744 (Clockwise)
Preceding gene: 120611237
Following gene: 120611242
Centisome position: 52.71
GC content: 62.14
Gene sequence:
>1260_bases ATGACCAGCTACCAGCACATCAAGGTCCCTGCCGAAGGCCAGAAGATCACCGTCAATGCCGACATGTCCCTGAACGTGCC GGACCAGCCCATCATTCCCTATATCGAGGGTGACGGTACCGGCTTCGACATCACCCCTGTGATGCTGAAAGTGGTGGACG CGGCCGTGGCCAAGGCCTACGGCGGCAAGCGCAAGATCCACTGGATGGAAGTCTTCGCCGGCGAGAAGTCCACGAAGGTG TACGGTCCCGACGTCTGGCTGCCGGAAGAAACCCTGCATGCCGTGCGCGACTACGTCGTTTCCATCAAGGGCCCGCTGAC GACGCCCGTGGGCGGCGGCATCCGCTCGCTGAACGTGGCGCTGCGCCAGGAACTCGACCTCTACGTCTGCCTGCGCCCCA TCCAGTACTTCAAGGGCGTTCCCTCGCCCGTGAAGGAACCCGAGAAGACCAACATGGTGATCTTCCGCGAGAACTCGGAA GACATCTATGCCGGCATCGAGTTCGAAGCCGAGTCCGACAAGGCCAAGAAGCTCATCAAGATCCTGCAGGAGGAGTTCGG CGTCAAGAAGATCCGCTTCCCCGAGACCTCCGGCATCGGCGTGAAGCCCGTGTCCAAGGAAGGCACGCAGCGCCTGGTGC GCAAGGCCATCCAGTACGCCATCGACAACGACAAGCCCAGCGTGACCATCGTCCACAAGGGCAACATCATGAAGTTCACG GAAGGCGGCTTCCGTGACTGGGCCTACGACCTGGCTGCCAGGGAATTCGGCGCCGAACTCATCGACGGCGGCCCGTGGAT GAAGTTCAAGAACCCGCGCACCGGCAAGGAAATCACGGTCAAGGACAGCATCGCCGACGCGTTCCTGCAGCAGATCCTGC TGCGCCCCGCCGAGTACAGCGTGATCGCCACGCTGAACCTGAACGGCGACTACGTCTCCGACGCGCTGGCAGCCCAGGTG GGCGGCATCGGCATCGCCCCGGGCGCCAACCTGTCCGACTCCGTCGCGATGTTCGAAGCCACGCACGGCACGGCACCGAA GTACGCCGGCAAGGACTACGTGAACCCCGGTTCCGAAATCCTTTCCGCCGAAATGATGCTGCGCCACATGGGCTGGACCG AAGCGGCCGACATCATCATCAGCTCGATGGAAAAATCCATCCTGAGCAAGAAGGTGACCTACGACTTCGCCCGCCTGATG GAAGGTGCGACGCAGGTGAGCTGCTCGGGCTTCGGCCAGGTGATGATCGACAACATGTGA
Upstream 100 bases:
>100_bases GCCTACAAATTTTTATCGCTAAAATCATCGCGTTTTGTGCCTGTCGCACAGGCCGGCCGGGCGCCGCCCCGGACGCCATT CCACCGGAGATAACCGTTCC
Downstream 100 bases:
>100_bases TTGCCGCCGGCGGCGTCGCTTGACGTTTCGCAAGCCCTTGATCCTCCCTGGGGATCAAGGGCTTTTCCGTTTTCGGGCGG GTCCGGCGGGCGCCACCTGG
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MTSYQHIKVPAEGQKITVNADMSLNVPDQPIIPYIEGDGTGFDITPVMLKVVDAAVAKAYGGKRKIHWMEVFAGEKSTKV YGPDVWLPEETLHAVRDYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVKEPEKTNMVIFRENSE DIYAGIEFEAESDKAKKLIKILQEEFGVKKIRFPETSGIGVKPVSKEGTQRLVRKAIQYAIDNDKPSVTIVHKGNIMKFT EGGFRDWAYDLAAREFGAELIDGGPWMKFKNPRTGKEITVKDSIADAFLQQILLRPAEYSVIATLNLNGDYVSDALAAQV GGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADIIISSMEKSILSKKVTYDFARLM EGATQVSCSGFGQVMIDNM
Sequences:
>Translated_419_residues MTSYQHIKVPAEGQKITVNADMSLNVPDQPIIPYIEGDGTGFDITPVMLKVVDAAVAKAYGGKRKIHWMEVFAGEKSTKV YGPDVWLPEETLHAVRDYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVKEPEKTNMVIFRENSE DIYAGIEFEAESDKAKKLIKILQEEFGVKKIRFPETSGIGVKPVSKEGTQRLVRKAIQYAIDNDKPSVTIVHKGNIMKFT EGGFRDWAYDLAAREFGAELIDGGPWMKFKNPRTGKEITVKDSIADAFLQQILLRPAEYSVIATLNLNGDYVSDALAAQV GGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADIIISSMEKSILSKKVTYDFARLM EGATQVSCSGFGQVMIDNM >Mature_418_residues TSYQHIKVPAEGQKITVNADMSLNVPDQPIIPYIEGDGTGFDITPVMLKVVDAAVAKAYGGKRKIHWMEVFAGEKSTKVY GPDVWLPEETLHAVRDYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVKEPEKTNMVIFRENSED IYAGIEFEAESDKAKKLIKILQEEFGVKKIRFPETSGIGVKPVSKEGTQRLVRKAIQYAIDNDKPSVTIVHKGNIMKFTE GGFRDWAYDLAAREFGAELIDGGPWMKFKNPRTGKEITVKDSIADAFLQQILLRPAEYSVIATLNLNGDYVSDALAAQVG GIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADIIISSMEKSILSKKVTYDFARLME GATQVSCSGFGQVMIDNM
Specific function: Unknown
COG id: COG0538
COG function: function code C; Isocitrate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isocitrate and isopropylmalate dehydrogenases family [H]
Homologues:
Organism=Homo sapiens, GI5031777, Length=384, Percent_Identity=30.9895833333333, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI28178821, Length=352, Percent_Identity=26.9886363636364, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI28178816, Length=352, Percent_Identity=26.9886363636364, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI4758582, Length=299, Percent_Identity=28.0936454849498, Blast_Score=106, Evalue=4e-23, Organism=Homo sapiens, GI28178838, Length=299, Percent_Identity=28.0936454849498, Blast_Score=106, Evalue=5e-23, Organism=Homo sapiens, GI28178819, Length=181, Percent_Identity=32.5966850828729, Blast_Score=81, Evalue=2e-15, Organism=Escherichia coli, GI1787381, Length=411, Percent_Identity=74.2092457420924, Blast_Score=644, Evalue=0.0, Organism=Escherichia coli, GI1788101, Length=377, Percent_Identity=25.9946949602122, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081683, Length=403, Percent_Identity=24.8138957816377, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71986051, Length=374, Percent_Identity=30.7486631016043, Blast_Score=155, Evalue=5e-38, Organism=Caenorhabditis elegans, GI25144293, Length=305, Percent_Identity=29.5081967213115, Blast_Score=118, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17505779, Length=301, Percent_Identity=29.2358803986711, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17550882, Length=280, Percent_Identity=24.6428571428571, Blast_Score=83, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6324709, Length=398, Percent_Identity=27.8894472361809, Blast_Score=152, Evalue=7e-38, Organism=Saccharomyces cerevisiae, GI6322097, Length=366, Percent_Identity=27.0491803278689, Blast_Score=120, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6324291, Length=366, Percent_Identity=26.2295081967213, Blast_Score=114, Evalue=2e-26, Organism=Drosophila melanogaster, GI24643268, Length=350, Percent_Identity=34.5714285714286, Blast_Score=180, Evalue=1e-45, Organism=Drosophila melanogaster, GI24643270, Length=350, Percent_Identity=34.5714285714286, Blast_Score=180, Evalue=1e-45, Organism=Drosophila melanogaster, GI24661184, Length=389, Percent_Identity=29.305912596401, Blast_Score=162, Evalue=5e-40, Organism=Drosophila melanogaster, GI161078635, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI161078633, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=7e-24, Organism=Drosophila melanogaster, GI24650122, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=7e-24, Organism=Drosophila melanogaster, GI161078637, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=7e-24, Organism=Drosophila melanogaster, GI161078639, Length=278, Percent_Identity=27.6978417266187, Blast_Score=108, Evalue=8e-24, Organism=Drosophila melanogaster, GI20130355, Length=390, Percent_Identity=22.5641025641026, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI281362242, Length=338, Percent_Identity=26.6272189349112, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI24648872, Length=338, Percent_Identity=26.6272189349112, Blast_Score=82, Evalue=7e-16,
Paralogues:
None
Copy number: 8180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019818 - InterPro: IPR001804 - InterPro: IPR004439 [H]
Pfam domain/function: PF00180 Iso_dh [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 46009; Mature: 45878
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00470 IDH_IMDH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSYQHIKVPAEGQKITVNADMSLNVPDQPIIPYIEGDGTGFDITPVMLKVVDAAVAKAY CCCCCEEECCCCCCEEEEECCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC GGKRKIHWMEVFAGEKSTKVYGPDVWLPEETLHAVRDYVVSIKGPLTTPVGGGIRSLNVA CCCCEEEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHH LRQELDLYVCLRPIQYFKGVPSPVKEPEKTNMVIFRENSEDIYAGIEFEAESDKAKKLIK HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHH ILQEEFGVKKIRFPETSGIGVKPVSKEGTQRLVRKAIQYAIDNDKPSVTIVHKGNIMKFT HHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEC EGGFRDWAYDLAAREFGAELIDGGPWMKFKNPRTGKEITVKDSIADAFLQQILLRPAEYS CCCCHHHHHHHHHHHHCHHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCEE VIATLNLNGDYVSDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEI EEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH LSAEMMLRHMGWTEAADIIISSMEKSILSKKVTYDFARLMEGATQVSCSGFGQVMIDNM HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEECCC >Mature Secondary Structure TSYQHIKVPAEGQKITVNADMSLNVPDQPIIPYIEGDGTGFDITPVMLKVVDAAVAKAY CCCCEEECCCCCCEEEEECCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC GGKRKIHWMEVFAGEKSTKVYGPDVWLPEETLHAVRDYVVSIKGPLTTPVGGGIRSLNVA CCCCEEEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHH LRQELDLYVCLRPIQYFKGVPSPVKEPEKTNMVIFRENSEDIYAGIEFEAESDKAKKLIK HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHH ILQEEFGVKKIRFPETSGIGVKPVSKEGTQRLVRKAIQYAIDNDKPSVTIVHKGNIMKFT HHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEC EGGFRDWAYDLAAREFGAELIDGGPWMKFKNPRTGKEITVKDSIADAFLQQILLRPAEYS CCCCHHHHHHHHHHHHCHHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCEE VIATLNLNGDYVSDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEI EEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH LSAEMMLRHMGWTEAADIIISSMEKSILSKKVTYDFARLMEGATQVSCSGFGQVMIDNM HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10361714; 10556719; 12704232 [H]