Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yagA [H]
Identifier: 120611229
GI number: 120611229
Start: 2812507
End: 2813454
Strand: Reverse
Name: yagA [H]
Synonym: Aave_2560
Alternate gene names: 120611229
Gene position: 2813454-2812507 (Counterclockwise)
Preceding gene: 120611230
Following gene: 120611227
Centisome position: 52.56
GC content: 66.56
Gene sequence:
>948_bases ATGAACAGTCATAAGCATGCGCGATTGACCCGCGCAGGTCGAGCCCTTCTGGTCGACAGAGTGCTCCAGCAGAACTGGAC GATGCGCCAAGCCAGCGAAGCCGCAGGCGTGAGCCTGCGCACCGGCTACAAGTGGATGGCCCGCTTTCGCAACGAAGGCC CCGATGGCTTGCTCGACCGCAGCTCCCGCCCGCACCGCAGCCCCCAGGCCTGCCCACCCGAGCAGGTCCAGCTGTTCGAA CAGCAGCGCCGCCAGCGCTTGCCCCTTTGGCGCATCGCCCGTGAGACCGGCCGCAGTCTGGCGACCGTAGCGCGCCACAT GGACCGCATCGGCCTGAGCCGGCTCGCATCGCTGGAGCCACCGCAGCCCGTGCGTCGCTACGAGCGCGCCAGCCCGGGCG AACTGCTGCACATCGACACCAAGCGGCTCGGCCGCATCCACGGCGTGGGCCACCGCATCACCGGCGACCGAACCCAGAAC CGCAACCGTGGCATCGGTTGGGATGCGGTGCATCTGGCCATCGACGACCACTCCCGCGTGTCCTTCGCCCAGGTCCTGGC CGACGAGACAGCGCTGAGTTGCGTGCAGTTCCTGCGAGACGCGGTGGCCTACTACGCCAACATCGGCGTACGCATCGAGC GCGTCATGACCGACAACGGCTCTGGCTACAAAAACGCCTTCCGCGCGGCCTGCGAGGAATTGGGCATCCGCCACATCCGC ACGCGGCCCTATACGCCCAAGACCAACGGCAAGGCCGAGCGATTCGTACAGACCAGCCTGCGGGAGTGGGCCTATGCCAG ACCCTACGAAAGCTCAGCCCAACGCACGGCTGCCCTGCAGCCCTTCATTGACGGCTACAACTGGTGCCGGCCACACTCCG CGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGTGAACAACCTCGTGAGACTCAACACCTAG
Upstream 100 bases:
>100_bases CCGGGGGGGCCTAGGTGTGATGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACCAGGCCCCAGC AACTCAGGACAGGACACCGG
Downstream 100 bases:
>100_bases GCCTGGGGCTGCGCCAGCCGCTCCAGCAGCAGTTCCACCCGCGTCTTCACCACGCTCAGCCCCTGCGCGACGGGCAGCGT GTCGCCAGGACGGGGCAGCA
Product: integrase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFE QQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQN RNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPPITRIPGVNNLVRLNT
Sequences:
>Translated_315_residues MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFE QQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQN RNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPPITRIPGVNNLVRLNT >Mature_315_residues MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFE QQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQN RNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPPITRIPGVNNLVRLNT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
Organism=Escherichia coli, GI1786462, Length=313, Percent_Identity=29.7124600638978, Blast_Score=82, Evalue=3e-17,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR001584 - InterPro: IPR012337 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 35902; Mature: 35902
Theoretical pI: Translated: 11.44; Mature: 11.44
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDR CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC SSRPHRSPQACPPEQVQLFEQQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEP CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC PQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQNRNRGIGWDAVHLAIDDHSRV CHHHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHH SFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHC TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPP CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ITRIPGVNNLVRLNT CCCCCCCCCEEEECC >Mature Secondary Structure MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDR CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC SSRPHRSPQACPPEQVQLFEQQRRQRLPLWRIARETGRSLATVARHMDRIGLSRLASLEP CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC PQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQNRNRGIGWDAVHLAIDDHSRV CHHHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHH SFAQVLADETALSCVQFLRDAVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHC TRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPP CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ITRIPGVNNLVRLNT CCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 8113168 [H]