Click here to switch to the map view.

The map label for this gene is ydeR [H]

Identifier: 120611203

GI number: 120611203

Start: 2781640

End: 2782893

Strand: Direct

Name: ydeR [H]

Synonym: Aave_2534

Alternate gene names: 120611203

Gene position: 2781640-2782893 (Clockwise)

Preceding gene: 120611200

Following gene: 120611204

Centisome position: 51.97

GC content: 74.64

Gene sequence:

>1254_bases
ATGACTTCCATTCATCCCGCGCATAACTCTGCCGGCATGGCCCCTGCAGCCCCCGGCGGCACCGCGCAACTCGCCGAGGT
ACCGGCGGCATTGGTCCTGCTGCTGGCCACCACCGCCGGCGTGAGCGTGGCCTCGCTCTACTACAGCCAGCCGATGCTCG
GCGTGCTGGGCCCGGACATCCATGCGGACGGGCGCTCCGTCGGCCTCGTGCCCACCCTCACGCAACTGGGCTATGCGCTC
GGTATCCTGTTGCTCGCCCCGCTGGGAGACCGGTACGACCGGCGCCGCATCATCCTGGCCAAGGCGGCCATGCTCGCCGC
GGCGCTGCTGGCCAGCGCCGCGGCCCCCGGCATCGCCGCGCTGCTGGCCGCCAGCCTCGCCATCGGCCTGTCCGCCACCC
TCGCGCAGGACGTAGTGCCGGCCGCAGCCACCGTGGCGGCCCCGCATGCGCGCGGCAAGGTGGTGGGCACGGTGATGACG
GGCCTGCTGCTGGGCATCCTGCTGTCGCGGGTGGTGAGCGGCCTGGGCGCGGCGGCGTTCGGCTGGCGCGCCGTGTATGG
CGCCGCGGCCGCCGCGGTCGCGCTGCTGGGCGTGGCCGCCTGGCGCTGGCTGCCGCGCTTCGCGCCCACCACCCACCTGG
GCTATGGCGCGCTGCTCGCCTCCATGGCCGGGCTGTGGCGGTCGCAGCGCCCGCTGCGCCGCGCGGCACTCGCGCAGGGG
TTGCTGTCGGTCGCGTTCAGCGCTTTCTGGTCCACGCTTGCCGTGATGCTGCACAGCGAGTTTCACTGGGGCAGTGCGGC
GGCGGGTGCCTTCGGCCTTGCCGGAGCGGCCGGCGCGCTCGCCGCGCCCCTGGCCGGCCGGCTGGCCGACCGCCGCGGGC
CCGGCTTGGTCACGCAACTGGGATCGGGGCTGGCCCTGGTGTTGTTCGCGTCTCTGCTGGCCGCGCACTGGCTCCCCGGC
TGGGCGCAGCTCGGCCTGCTGGTGGCCAGTGCCATCGGTTTCGACTTCGGCATCCAGGCGGCGCTGGTGGCCCACCAGAC
CCTCGTCTATGGCCTGGAGCCCGCCGCGCGCAGCCGCCTGAATGCCCTGCTGTTCACTGGCGTGTTCATCGGCATGGCCA
CGGGTTCCGCGCTCGGTGCGCTGGCCATGGCCCGCTGGGGCTGGTCCGGCGTGGCCGTGCTGGCCACGCTGGCCTGTGCG
GCAGCGCTGGCCGTGCGCATGGGCGATGCGCACGGTCGGGCCGCCCGGGCCTGA

Upstream 100 bases:

>100_bases
GTCATGCGTGTAGCGTATATCTGATCTGCGCGCGGGTAGGCTACCGCATATCCTAAGGAGCGGGGACACTGCAGCCATTG
TCTTTCCCAGGCGTATTCCT

Downstream 100 bases:

>100_bases
GCGTCGCCGGGCTCGGCAAAAAGGCGCACGGCTCGGCCGTGTTCCGGTCGGCGGAACAGCCCCTCGTGCCCCTGCGGGCG
CAATGGCGGTTGGTGCGGAG

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTSIHPAHNSAGMAPAAPGGTAQLAEVPAALVLLLATTAGVSVASLYYSQPMLGVLGPDIHADGRSVGLVPTLTQLGYAL
GILLLAPLGDRYDRRRIILAKAAMLAAALLASAAAPGIAALLAASLAIGLSATLAQDVVPAAATVAAPHARGKVVGTVMT
GLLLGILLSRVVSGLGAAAFGWRAVYGAAAAAVALLGVAAWRWLPRFAPTTHLGYGALLASMAGLWRSQRPLRRAALAQG
LLSVAFSAFWSTLAVMLHSEFHWGSAAAGAFGLAGAAGALAAPLAGRLADRRGPGLVTQLGSGLALVLFASLLAAHWLPG
WAQLGLLVASAIGFDFGIQAALVAHQTLVYGLEPAARSRLNALLFTGVFIGMATGSALGALAMARWGWSGVAVLATLACA
AALAVRMGDAHGRAARA

Sequences:

>Translated_417_residues
MTSIHPAHNSAGMAPAAPGGTAQLAEVPAALVLLLATTAGVSVASLYYSQPMLGVLGPDIHADGRSVGLVPTLTQLGYAL
GILLLAPLGDRYDRRRIILAKAAMLAAALLASAAAPGIAALLAASLAIGLSATLAQDVVPAAATVAAPHARGKVVGTVMT
GLLLGILLSRVVSGLGAAAFGWRAVYGAAAAAVALLGVAAWRWLPRFAPTTHLGYGALLASMAGLWRSQRPLRRAALAQG
LLSVAFSAFWSTLAVMLHSEFHWGSAAAGAFGLAGAAGALAAPLAGRLADRRGPGLVTQLGSGLALVLFASLLAAHWLPG
WAQLGLLVASAIGFDFGIQAALVAHQTLVYGLEPAARSRLNALLFTGVFIGMATGSALGALAMARWGWSGVAVLATLACA
AALAVRMGDAHGRAARA
>Mature_416_residues
TSIHPAHNSAGMAPAAPGGTAQLAEVPAALVLLLATTAGVSVASLYYSQPMLGVLGPDIHADGRSVGLVPTLTQLGYALG
ILLLAPLGDRYDRRRIILAKAAMLAAALLASAAAPGIAALLAASLAIGLSATLAQDVVPAAATVAAPHARGKVVGTVMTG
LLLGILLSRVVSGLGAAAFGWRAVYGAAAAAVALLGVAAWRWLPRFAPTTHLGYGALLASMAGLWRSQRPLRRAALAQGL
LSVAFSAFWSTLAVMLHSEFHWGSAAAGAFGLAGAAGALAAPLAGRLADRRGPGLVTQLGSGLALVLFASLLAAHWLPGW
AQLGLLVASAIGFDFGIQAALVAHQTLVYGLEPAARSRLNALLFTGVFIGMATGSALGALAMARWGWSGVAVLATLACAA
ALAVRMGDAHGRAARA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=425, Percent_Identity=24.7058823529412, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41768; Mature: 41636

Theoretical pI: Translated: 11.73; Mature: 11.73

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIHPAHNSAGMAPAAPGGTAQLAEVPAALVLLLATTAGVSVASLYYSQPMLGVLGPDI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCCC
HADGRSVGLVPTLTQLGYALGILLLAPLGDRYDRRRIILAKAAMLAAALLASAAAPGIAA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LLAASLAIGLSATLAQDVVPAAATVAAPHARGKVVGTVMTGLLLGILLSRVVSGLGAAAF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GWRAVYGAAAAAVALLGVAAWRWLPRFAPTTHLGYGALLASMAGLWRSQRPLRRAALAQG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLSVAFSAFWSTLAVMLHSEFHWGSAAAGAFGLAGAAGALAAPLAGRLADRRGPGLVTQL
HHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
GSGLALVLFASLLAAHWLPGWAQLGLLVASAIGFDFGIQAALVAHQTLVYGLEPAARSRL
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NALLFTGVFIGMATGSALGALAMARWGWSGVAVLATLACAAALAVRMGDAHGRAARA
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TSIHPAHNSAGMAPAAPGGTAQLAEVPAALVLLLATTAGVSVASLYYSQPMLGVLGPDI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCCC
HADGRSVGLVPTLTQLGYALGILLLAPLGDRYDRRRIILAKAAMLAAALLASAAAPGIAA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
LLAASLAIGLSATLAQDVVPAAATVAAPHARGKVVGTVMTGLLLGILLSRVVSGLGAAAF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GWRAVYGAAAAAVALLGVAAWRWLPRFAPTTHLGYGALLASMAGLWRSQRPLRRAALAQG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLSVAFSAFWSTLAVMLHSEFHWGSAAAGAFGLAGAAGALAAPLAGRLADRRGPGLVTQL
HHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
GSGLALVLFASLLAAHWLPGWAQLGLLVASAIGFDFGIQAALVAHQTLVYGLEPAARSRL
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NALLFTGVFIGMATGSALGALAMARWGWSGVAVLATLACAAALAVRMGDAHGRAARA
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]