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The map label for this gene is yciR [C]

Identifier: 120611176

GI number: 120611176

Start: 2746205

End: 2747284

Strand: Reverse

Name: yciR [C]

Synonym: Aave_2507

Alternate gene names: 120611176

Gene position: 2747284-2746205 (Counterclockwise)

Preceding gene: 120611177

Following gene: 120611169

Centisome position: 51.32

GC content: 70.0

Gene sequence:

>1080_bases
GTGGGCCTGCACCGCGACGGCAGCGCCCTGCCGCTGCGCCTGTCCATCGGCCGCGCCAACGCGCCGGACGGCCCGCTGTT
CGTCGGCTTCCTGATCGACCTGCGCGGCGTGAAGGAGGCCGAGATGCGCCTGGGCATCGCCGCCAGCGTGTTCGAGCACA
GCTACGAGGCCGTGCTGATCCTCGACTCGGACCACCACATCGTGGATGCCAACCCCGCCTTCGAGCGCATGACCGGCATC
TGCCGGAAGGACCTGCTCGGCACCCCGGTCGAGCAGCTCTATCCGGGCTCGGAAGACACCCCGGAGGACGGCGCCGCTGA
AGACCGCGCCCTCGACCGGCCCCGCTTCGCGGCGATCTGGCGCACCATCCAGTCGCAGGGGTACTGGCAGGGCGAGATCC
TGGGACGCGGCCTGGGCATCGCCATGCCGCAGCGCATCTCCATCGCCAGCGTGCTGGGCAAGGAAGGCTATCCGCACCAC
TACATCGTGGTCATCACCGACATCAGCCAGATCAAGGCGCACGAGCAGGAACTGCAGCACATCGCGCTCTACGACAGCCT
GACGGGACTGCCCAACCGGCGCCTGCTGGCGGACCGCCTCGTGCAGGGCATCGCGCAGGCGCAGCGCAGGCGCCAGCTGC
TGGCCGTGTGCTACCTCGACCTCGACGGGTTCAAGCGCGTCAACGACCAGCACGGCCATGCCGCGGGCGACCAACTCCTC
GTCGAGGTCGGCCGGCGCATCCAGGCCCAGTTGCGCGCGGAGGACACCCTCGCCCGGCTGGGCGGCGACGAGATGGTCGT
GCTCATCAATGGACTGCAGGCCCCCGAGGACTGCACGCCCCTCATCGACCGCATCCTGCACGCCGTGCGCCAGCCCGTGC
CCCTGCCCAAGGGCCAGGGCTTCGTCTCGGCCAGCATGGGCCTGAGCTTCTACCCTACCGACGGGGACACGCCCGACCTG
CTGCTGCGGCAGGCCGACCATGCAATGTACGAAGCCAAGCAGGACGGCAAGAACCACTGCCGGCACTTCGGGAGCGACAC
CGCCGATGCGCCGGGTGTCGGCGGCGCCAGGGCCGATTGA

Upstream 100 bases:

>100_bases
GCATGCTGATGCCTCGCCCGACAGCGAAGCCCACGACGGCTACCTCCAGCGCTACCTGGCCACCGGCGAGGCCCGCATCA
TCGGCACCGGCCGGGAAGTG

Downstream 100 bases:

>100_bases
CCCGGGTGAGACCGCGTTGCTTCTTCAGCTCGCGGATTCCGGCCCACCGTTGGCGGGCATGCCGCCCCGGCGGTGCGCCA
TGCTGTAGATCAGCGGGAGC

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MGLHRDGSALPLRLSIGRANAPDGPLFVGFLIDLRGVKEAEMRLGIAASVFEHSYEAVLILDSDHHIVDANPAFERMTGI
CRKDLLGTPVEQLYPGSEDTPEDGAAEDRALDRPRFAAIWRTIQSQGYWQGEILGRGLGIAMPQRISIASVLGKEGYPHH
YIVVITDISQIKAHEQELQHIALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLDGFKRVNDQHGHAAGDQLL
VEVGRRIQAQLRAEDTLARLGGDEMVVLINGLQAPEDCTPLIDRILHAVRQPVPLPKGQGFVSASMGLSFYPTDGDTPDL
LLRQADHAMYEAKQDGKNHCRHFGSDTADAPGVGGARAD

Sequences:

>Translated_359_residues
MGLHRDGSALPLRLSIGRANAPDGPLFVGFLIDLRGVKEAEMRLGIAASVFEHSYEAVLILDSDHHIVDANPAFERMTGI
CRKDLLGTPVEQLYPGSEDTPEDGAAEDRALDRPRFAAIWRTIQSQGYWQGEILGRGLGIAMPQRISIASVLGKEGYPHH
YIVVITDISQIKAHEQELQHIALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLDGFKRVNDQHGHAAGDQLL
VEVGRRIQAQLRAEDTLARLGGDEMVVLINGLQAPEDCTPLIDRILHAVRQPVPLPKGQGFVSASMGLSFYPTDGDTPDL
LLRQADHAMYEAKQDGKNHCRHFGSDTADAPGVGGARAD
>Mature_358_residues
GLHRDGSALPLRLSIGRANAPDGPLFVGFLIDLRGVKEAEMRLGIAASVFEHSYEAVLILDSDHHIVDANPAFERMTGIC
RKDLLGTPVEQLYPGSEDTPEDGAAEDRALDRPRFAAIWRTIQSQGYWQGEILGRGLGIAMPQRISIASVLGKEGYPHHY
IVVITDISQIKAHEQELQHIALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLDGFKRVNDQHGHAAGDQLLV
EVGRRIQAQLRAEDTLARLGGDEMVVLINGLQAPEDCTPLIDRILHAVRQPVPLPKGQGFVSASMGLSFYPTDGDTPDLL
LRQADHAMYEAKQDGKNHCRHFGSDTADAPGVGGARAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=297, Percent_Identity=31.6498316498317, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1788381, Length=298, Percent_Identity=28.5234899328859, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=35.5263157894737, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=29.8245614035088, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=29.9435028248588, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=191, Percent_Identity=33.5078534031414, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=182, Percent_Identity=31.3186813186813, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=32.0754716981132, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.2784810126582, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=29.5180722891566, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=29.1208791208791, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=30.635838150289, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081921, Length=193, Percent_Identity=29.5336787564767, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081974, Length=174, Percent_Identity=25.2873563218391, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 39314; Mature: 39183

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLHRDGSALPLRLSIGRANAPDGPLFVGFLIDLRGVKEAEMRLGIAASVFEHSYEAVLI
CCCCCCCCCCEEEEEECCCCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEE
LDSDHHIVDANPAFERMTGICRKDLLGTPVEQLYPGSEDTPEDGAAEDRALDRPRFAAIW
ECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHH
RTIQSQGYWQGEILGRGLGIAMPQRISIASVLGKEGYPHHYIVVITDISQIKAHEQELQH
HHHHHCCCEEHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHH
IALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLDGFKRVNDQHGHAAGDQLL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCCHHHHHH
VEVGRRIQAQLRAEDTLARLGGDEMVVLINGLQAPEDCTPLIDRILHAVRQPVPLPKGQG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
FVSASMGLSFYPTDGDTPDLLLRQADHAMYEAKQDGKNHCRHFGSDTADAPGVGGARAD
EEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLHRDGSALPLRLSIGRANAPDGPLFVGFLIDLRGVKEAEMRLGIAASVFEHSYEAVLI
CCCCCCCCCEEEEEECCCCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEE
LDSDHHIVDANPAFERMTGICRKDLLGTPVEQLYPGSEDTPEDGAAEDRALDRPRFAAIW
ECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHH
RTIQSQGYWQGEILGRGLGIAMPQRISIASVLGKEGYPHHYIVVITDISQIKAHEQELQH
HHHHHCCCEEHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHH
IALYDSLTGLPNRRLLADRLVQGIAQAQRRRQLLAVCYLDLDGFKRVNDQHGHAAGDQLL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCCHHHHHH
VEVGRRIQAQLRAEDTLARLGGDEMVVLINGLQAPEDCTPLIDRILHAVRQPVPLPKGQG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
FVSASMGLSFYPTDGDTPDLLLRQADHAMYEAKQDGKNHCRHFGSDTADAPGVGGARAD
EEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]