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The map label for this gene is 120611159

Identifier: 120611159

GI number: 120611159

Start: 2722172

End: 2723599

Strand: Reverse

Name: 120611159

Synonym: Aave_2488

Alternate gene names: NA

Gene position: 2723599-2722172 (Counterclockwise)

Preceding gene: 120611160

Following gene: 120611158

Centisome position: 50.88

GC content: 66.53

Gene sequence:

>1428_bases
ATGCTCTATAACCTCTACGAAACGCAGCGTTCCCTGATGGAGCCGTTCGCGGAACTCGCGCAGACCGTCTCCAAGATCTA
CAGCAACCCGGTTTCGCCGTTCAGCCACACGACCTACGCCCAGCGCATGTCCGCGGGCTACGACCTGCTGTACCGGCTGG
GCAAGGACTACGAGAAGCCGGTGTTCGGCATCTCCACCGTGCAGGTGGACGGCCACGAGGTGGTCATCCATGAACGGGTG
GAGCTGGACAAGCCCTTCTGCGAGCTGCGCCGCTTCAAGCGCTTCTGCGACAACCCCACCACGCTCGAGACCATCAAGCG
CCAGCCCGCCGTGCTGATCGTGGCACCGCTGTCCGGCCACTACGCCACACTGTTGCGCGATACCGTGCGCACCATGCTGC
AGGGCCACAAGGTCTTCATCACCGACTGGAAGAACGCCCGCCTCGTGCCCCTGGCGGACGGCGAATTCCACCTGGACGAC
TACGTGAACTACGTGCAGGAATTCATCCGCCTGCTGCAGTCCCGCTATGACAACTGCCACGTGATGAGCGTGTGCCAGCC
CACGGTGCCGGTGCTCGCGGCCGTCTCCCTCATGGCCAGCCGCGGCGAGAAGACGCCCCTGTCCATGACCATGATGGGCG
GCCCGATCGACGCGCGCAAATCCCCCACGGCAGTGAACAACCTCGCCACGCAGCGCAGTTTCGAGTGGTTCGAGAACAAC
GTCATCTACCGCGTGCCGGACAGCTTCCCCGGCGCCGGGCGCCGCGTGTACCCGGGCTTCCTGCAGCACACGGGCTTCGT
GGCCATGAATCCCGACCGCCACGCCAAGAGCCACTACGACTACTTCAAGGACCTGATCAAGGGCGACGATGCCAGCGCCG
AGGCCCACCGCAAGTTCTACGACGAATACAACGCCGTGCTCGACATGGATGCGGACTACTACCTCGAGACCATCAGGACG
GTCTTCCAGGACTACAGCCTCGTCCATGGCACCTGGGATGTGCGCTCGCCCGAAGGCCAGCCCGAGCGCGTGCGCCCGCA
GGACATCCGCACCACCGCCCTGCTGACCATCGAAGGCGAGCTGGACGACATCTCCGGCTCGGGCCAGACGGAAGCCGCGC
ACAGCCTGTGCACGGCCATCCCCGAGAAGGACCGCCGCCACTTCGAGGTCAAGGGCGCGGGCCACTACGGCATCTTCAGC
GGCCGCCGCTGGCGCGAGATCGTCTATCCGCAGGTGCGGGACTTCATCCTCGCCCACGATCCGCAGCCCGCCACCACGGT
GGACAGCGCTTCCGTGCCCAGCGAAGACGCGCCCCGCCGCCGCACCGGAGCCGCCGCAGCGCCCGCGGACCTGCTGTCCG
AGGAACTGCCGACCGCCACCGCCGCACCGCAGACGCGCAGCCGGCGCAGCGCGCCCAACAAGGCTTGA

Upstream 100 bases:

>100_bases
GGGTTGTCGCATTGGCGACTCCGCATCCGTAGTTTCACGCCACACGCCCGGCGCGAACTGCTGCTATATTGCACTGCAAC
ATTTTTCGCCGAGCCGTCCC

Downstream 100 bases:

>100_bases
CGGCGCCCCCTCCCGCTGCCGCCACGCGCGTCCTGGCGGCCCGGATCGACGCGGCGTTGCCGCAGACTCAGTGCACCCGC
TGCGGCTACCCCGACTGTGC

Product: polyhydroxyalkanoate depolymerase

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxybutyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MLYNLYETQRSLMEPFAELAQTVSKIYSNPVSPFSHTTYAQRMSAGYDLLYRLGKDYEKPVFGISTVQVDGHEVVIHERV
ELDKPFCELRRFKRFCDNPTTLETIKRQPAVLIVAPLSGHYATLLRDTVRTMLQGHKVFITDWKNARLVPLADGEFHLDD
YVNYVQEFIRLLQSRYDNCHVMSVCQPTVPVLAAVSLMASRGEKTPLSMTMMGGPIDARKSPTAVNNLATQRSFEWFENN
VIYRVPDSFPGAGRRVYPGFLQHTGFVAMNPDRHAKSHYDYFKDLIKGDDASAEAHRKFYDEYNAVLDMDADYYLETIRT
VFQDYSLVHGTWDVRSPEGQPERVRPQDIRTTALLTIEGELDDISGSGQTEAAHSLCTAIPEKDRRHFEVKGAGHYGIFS
GRRWREIVYPQVRDFILAHDPQPATTVDSASVPSEDAPRRRTGAAAAPADLLSEELPTATAAPQTRSRRSAPNKA

Sequences:

>Translated_475_residues
MLYNLYETQRSLMEPFAELAQTVSKIYSNPVSPFSHTTYAQRMSAGYDLLYRLGKDYEKPVFGISTVQVDGHEVVIHERV
ELDKPFCELRRFKRFCDNPTTLETIKRQPAVLIVAPLSGHYATLLRDTVRTMLQGHKVFITDWKNARLVPLADGEFHLDD
YVNYVQEFIRLLQSRYDNCHVMSVCQPTVPVLAAVSLMASRGEKTPLSMTMMGGPIDARKSPTAVNNLATQRSFEWFENN
VIYRVPDSFPGAGRRVYPGFLQHTGFVAMNPDRHAKSHYDYFKDLIKGDDASAEAHRKFYDEYNAVLDMDADYYLETIRT
VFQDYSLVHGTWDVRSPEGQPERVRPQDIRTTALLTIEGELDDISGSGQTEAAHSLCTAIPEKDRRHFEVKGAGHYGIFS
GRRWREIVYPQVRDFILAHDPQPATTVDSASVPSEDAPRRRTGAAAAPADLLSEELPTATAAPQTRSRRSAPNKA
>Mature_475_residues
MLYNLYETQRSLMEPFAELAQTVSKIYSNPVSPFSHTTYAQRMSAGYDLLYRLGKDYEKPVFGISTVQVDGHEVVIHERV
ELDKPFCELRRFKRFCDNPTTLETIKRQPAVLIVAPLSGHYATLLRDTVRTMLQGHKVFITDWKNARLVPLADGEFHLDD
YVNYVQEFIRLLQSRYDNCHVMSVCQPTVPVLAAVSLMASRGEKTPLSMTMMGGPIDARKSPTAVNNLATQRSFEWFENN
VIYRVPDSFPGAGRRVYPGFLQHTGFVAMNPDRHAKSHYDYFKDLIKGDDASAEAHRKFYDEYNAVLDMDADYYLETIRT
VFQDYSLVHGTWDVRSPEGQPERVRPQDIRTTALLTIEGELDDISGSGQTEAAHSLCTAIPEKDRRHFEVKGAGHYGIFS
GRRWREIVYPQVRDFILAHDPQPATTVDSASVPSEDAPRRRTGAAAAPADLLSEELPTATAAPQTRSRRSAPNKA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.1.-

Molecular weight: Translated: 53730; Mature: 53730

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYNLYETQRSLMEPFAELAQTVSKIYSNPVSPFSHTTYAQRMSAGYDLLYRLGKDYEKP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
VFGISTVQVDGHEVVIHERVELDKPFCELRRFKRFCDNPTTLETIKRQPAVLIVAPLSGH
EEEEEEEEECCCEEEEECCHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCH
YATLLRDTVRTMLQGHKVFITDWKNARLVPLADGEFHLDDYVNYVQEFIRLLQSRYDNCH
HHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCE
VMSVCQPTVPVLAAVSLMASRGEKTPLSMTMMGGPIDARKSPTAVNNLATQRSFEWFENN
EEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
VIYRVPDSFPGAGRRVYPGFLQHTGFVAMNPDRHAKSHYDYFKDLIKGDDASAEAHRKFY
EEEECCCCCCCCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
DEYNAVLDMDADYYLETIRTVFQDYSLVHGTWDVRSPEGQPERVRPQDIRTTALLTIEGE
HHHHHEEECCHHHHHHHHHHHHHCCHHEECEECCCCCCCCCCCCCCCCCCEEEEEEEECC
LDDISGSGQTEAAHSLCTAIPEKDRRHFEVKGAGHYGIFSGRRWREIVYPQVRDFILAHD
CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEECC
PQPATTVDSASVPSEDAPRRRTGAAAAPADLLSEELPTATAAPQTRSRRSAPNKA
CCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MLYNLYETQRSLMEPFAELAQTVSKIYSNPVSPFSHTTYAQRMSAGYDLLYRLGKDYEKP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
VFGISTVQVDGHEVVIHERVELDKPFCELRRFKRFCDNPTTLETIKRQPAVLIVAPLSGH
EEEEEEEEECCCEEEEECCHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCH
YATLLRDTVRTMLQGHKVFITDWKNARLVPLADGEFHLDDYVNYVQEFIRLLQSRYDNCH
HHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCE
VMSVCQPTVPVLAAVSLMASRGEKTPLSMTMMGGPIDARKSPTAVNNLATQRSFEWFENN
EEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
VIYRVPDSFPGAGRRVYPGFLQHTGFVAMNPDRHAKSHYDYFKDLIKGDDASAEAHRKFY
EEEECCCCCCCCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
DEYNAVLDMDADYYLETIRTVFQDYSLVHGTWDVRSPEGQPERVRPQDIRTTALLTIEGE
HHHHHEEECCHHHHHHHHHHHHHCCHHEECEECCCCCCCCCCCCCCCCCCEEEEEEEECC
LDDISGSGQTEAAHSLCTAIPEKDRRHFEVKGAGHYGIFSGRRWREIVYPQVRDFILAHD
CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEECC
PQPATTVDSASVPSEDAPRRRTGAAAAPADLLSEELPTATAAPQTRSRRSAPNKA
CCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA