Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is pbpG [H]
Identifier: 120611140
GI number: 120611140
Start: 2699692
End: 2702232
Strand: Direct
Name: pbpG [H]
Synonym: Aave_2469
Alternate gene names: 120611140
Gene position: 2699692-2702232 (Clockwise)
Preceding gene: 120611139
Following gene: 120611141
Centisome position: 50.44
GC content: 70.09
Gene sequence:
>2541_bases ATGCTGCTGTGGGCGCTGGCCGCGGTGCCGGCCGCGCTGTTGGTTTACACGCTGCTGCTCTGGCCCTTCACGCCCGCGAT CAGCGACATCCGCAAGGCCAAGACCGAGCAGCCGGCCCAGCTCGTGTCGGCCGATGGCCGCCTGCTGGCCGAGTACCGCT GGGTGAACCGGGAATGGGTGGCGCTGGAGGACATCGCACCGTCGGTGGTGGATGCGCTGATCGCCACCGAGGACCACCGC TTCTACGACCATTTCGGGCTGGACTGGCGGCGCACCGGGTCGGCCCTGATCCGCACCCTGGGAGGCAACAAGCAGGGCGG ATCGACCATCACGCAGCAGCTGGCTCGCAATCTCTACCCCGAGGACGTGGGCCGCGCCCCCACGCTGACGCGCAAGCTCA AGGAAGCGATCACGGCGCTGAAGATCGAGGCGCTGTATTCCAAGGACGAGATCCTGGAAACCTATCTCAACACCGTGCCT TTCCTCTACAACGCCTACGGCATCGAGATGGCGGCGCGCACCTATTTCGACAAGTCGGCCGACAAGCTCACGGTGCTGGA GAGCGCGACGCTCATCGGCATGCTCAAGGGCACGAGCTACTACAACCCGGTGCTGAATCCGGAGCGCGCCCAGGCGCGGC GCAACGTGGTGCTGGCGCAGATGGAAAAGCGCGGCAAGCTGTCGTCCAGGGATTTCGATACCCTGTCGAAGCGGCCCCTG CGCATCCGGTTCGAGCGCCAGCTGGAGGCCGCGGGCCCTGCACCCCATCTGGCCCAGCAACTGCGCAAGCAGCTCATCGA CTGGGCCGACCGCAATGGATACAGCCTGTACGCCGACGGCCTGGTGATCCGCACGACCATCGATTTCCGGTTGCAGACCC TGGCCAACCAGGCGGTGGCCCGGCAGGGCCGTCAGCTGCAATCCGTCGCCGACGGGGCGTGGGGACCGCGGGTCTGGAAT GCCAGGAGTCCCCTGGTGCAGACCTTCGTGCGGGAGTCGGCCCAGTACGCCGCTGCCGTGGCCAAGGGCATGTCCGAAGA CGACGCCCTCAAGTCGCTGCTGGCGGACGCGGACTTCATGCGCAAGCTGCGCCAGGACAAGACCCGCGTGCAGGCGGGCT TCCTGGCGATGGATCCCCGCACCGGCCAGGTCCGCGCATGGGTGGGCAGCCGCGATTTCGCGCAGGATCCATTCGACCAC GTGCAGGCGGCGCGGCGGCAGCCGGGCTCGACCTTCAAGCCCTTCGTCTATGGAGCCGCCTTCGCCAAGGGGGCCCTGCC CACCGATACGCTGATCGACCAGGCCGTGGAGATCCCGCTGGGCGGCGGCCGGATGTGGCGTCCCACGGACGAAGGCGCCG CGCCGAGCGGCGAGCCGATGACGCTGAGCGACGGGCTGGCCTATTCCAAGAACACGATCACCGCGCAACTGATGCAGCGG GTCGGACCGGAACGCGTGGCCGACCTGGCGCGCGCCATGGGCGTGCGGGAGTCCCCGCTGGATGCCGTGCCGTCCCTGGC GCTGGGCACGAGCCCTGTCACGCTCAAGGAGATGGTGGCGGCGTACGGGACCATCGCCGAGGCGGGCCGCTACATCGCGC CCACGGTCATCACGCGCATCGAGGACAAGAACGGCAAGGTGCTGGAGGATTTCAGCCCGGCGGTCCCGGAGCGCGTGCTG GGGCTGGGCCCCGCGCAGATGCTGCGCAATGCGCTGCGCGCCGTGGTGGACAAGGGCACGGGCGCCGCCATCCGGTCGCG CTACGGCATCACGGCGGACGTGGCGGGCAAGACCGGCACGACGCAGGACGCCGCGGATGGATGGTTCCTGCTCATGCATC CGCAACTGGTGGCGGGCGCCTGGGCCGGCTTCAACGACGGCCGCGTGACGCTGCGCAGCGACTACTGGGGTCAGGGCGCG CACAGCGCGCTGCCGATGGTCGGCGACGTCTTCCAGCAGGCCTTGCGCTCGCGCGTGATCGACCCCGGAGAGAAATTCAT CGACCAGGAGGAAAGCAGCTGGGTCGGCCAGGCGGTGGATGGCGTGCGGCAGTGGGCGCTCTCCGTCTATGACCTGTTCG GGCGGCGCACCGATGCGCAGGCCGGAGGCGCGGGGGCGGAGCCGCCGGCGAGAGCGCCCGTGCCGTCTGCCAGTGCACCT GCCAGCGCACCCGCGGATACACGGCCCGAGATCACCGAGGCGCCGTTGACGCCGCTGCAGGATGCAACACCCAGCGCGCC GTATGTTCCCCCGGCCGAGGTGGACCTGCCTGCGGAGAATGCGGGCTCTGCGCCGCCCCCGGCCACCCCGGGCGGCAGCG GAACGCTGCCGCCGGTGACCACCGACCCGCCCGGGTCCACGGTGCCGGGCACTGTGCCCGGGGCCTCGCCCGGGCCATCC GGTGGCGTTGGTGGTGCGGGTGGCTCGAATGGTCCGGACGGGACCGGTGCTGCGCCCAGCGTCGAGGTTGCGCCCGTCCA GCGCGGCACCGTCGTGCCGGGGAGCGCGCAGCAGCCGTTCTTCGTCGAATCGCGCCCTTGA
Upstream 100 bases:
>100_bases CGCTTCCCTGCGCTCCTGGTTGTCCAGCGGGCCGTTTTCCTCGCTGACCCGCCGCGCTGGCGCCGCGCTGCGCTGGTTCC TTGCCCGGCGGCCAGCCCGG
Downstream 100 bases:
>100_bases GCGCTGTAAAGGGCGCTGCGGTTCCGCGGAGCGGATCCGCGCCGTCGGGACCGGCCGGGCACGTTCCCTGCAATACCCGG CGCGGTATGCTGGCGCGGCC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MLLWALAAVPAALLVYTLLLWPFTPAISDIRKAKTEQPAQLVSADGRLLAEYRWVNREWVALEDIAPSVVDALIATEDHR FYDHFGLDWRRTGSALIRTLGGNKQGGSTITQQLARNLYPEDVGRAPTLTRKLKEAITALKIEALYSKDEILETYLNTVP FLYNAYGIEMAARTYFDKSADKLTVLESATLIGMLKGTSYYNPVLNPERAQARRNVVLAQMEKRGKLSSRDFDTLSKRPL RIRFERQLEAAGPAPHLAQQLRKQLIDWADRNGYSLYADGLVIRTTIDFRLQTLANQAVARQGRQLQSVADGAWGPRVWN ARSPLVQTFVRESAQYAAAVAKGMSEDDALKSLLADADFMRKLRQDKTRVQAGFLAMDPRTGQVRAWVGSRDFAQDPFDH VQAARRQPGSTFKPFVYGAAFAKGALPTDTLIDQAVEIPLGGGRMWRPTDEGAAPSGEPMTLSDGLAYSKNTITAQLMQR VGPERVADLARAMGVRESPLDAVPSLALGTSPVTLKEMVAAYGTIAEAGRYIAPTVITRIEDKNGKVLEDFSPAVPERVL GLGPAQMLRNALRAVVDKGTGAAIRSRYGITADVAGKTGTTQDAADGWFLLMHPQLVAGAWAGFNDGRVTLRSDYWGQGA HSALPMVGDVFQQALRSRVIDPGEKFIDQEESSWVGQAVDGVRQWALSVYDLFGRRTDAQAGGAGAEPPARAPVPSASAP ASAPADTRPEITEAPLTPLQDATPSAPYVPPAEVDLPAENAGSAPPPATPGGSGTLPPVTTDPPGSTVPGTVPGASPGPS GGVGGAGGSNGPDGTGAAPSVEVAPVQRGTVVPGSAQQPFFVESRP
Sequences:
>Translated_846_residues MLLWALAAVPAALLVYTLLLWPFTPAISDIRKAKTEQPAQLVSADGRLLAEYRWVNREWVALEDIAPSVVDALIATEDHR FYDHFGLDWRRTGSALIRTLGGNKQGGSTITQQLARNLYPEDVGRAPTLTRKLKEAITALKIEALYSKDEILETYLNTVP FLYNAYGIEMAARTYFDKSADKLTVLESATLIGMLKGTSYYNPVLNPERAQARRNVVLAQMEKRGKLSSRDFDTLSKRPL RIRFERQLEAAGPAPHLAQQLRKQLIDWADRNGYSLYADGLVIRTTIDFRLQTLANQAVARQGRQLQSVADGAWGPRVWN ARSPLVQTFVRESAQYAAAVAKGMSEDDALKSLLADADFMRKLRQDKTRVQAGFLAMDPRTGQVRAWVGSRDFAQDPFDH VQAARRQPGSTFKPFVYGAAFAKGALPTDTLIDQAVEIPLGGGRMWRPTDEGAAPSGEPMTLSDGLAYSKNTITAQLMQR VGPERVADLARAMGVRESPLDAVPSLALGTSPVTLKEMVAAYGTIAEAGRYIAPTVITRIEDKNGKVLEDFSPAVPERVL GLGPAQMLRNALRAVVDKGTGAAIRSRYGITADVAGKTGTTQDAADGWFLLMHPQLVAGAWAGFNDGRVTLRSDYWGQGA HSALPMVGDVFQQALRSRVIDPGEKFIDQEESSWVGQAVDGVRQWALSVYDLFGRRTDAQAGGAGAEPPARAPVPSASAP ASAPADTRPEITEAPLTPLQDATPSAPYVPPAEVDLPAENAGSAPPPATPGGSGTLPPVTTDPPGSTVPGTVPGASPGPS GGVGGAGGSNGPDGTGAAPSVEVAPVQRGTVVPGSAQQPFFVESRP >Mature_846_residues MLLWALAAVPAALLVYTLLLWPFTPAISDIRKAKTEQPAQLVSADGRLLAEYRWVNREWVALEDIAPSVVDALIATEDHR FYDHFGLDWRRTGSALIRTLGGNKQGGSTITQQLARNLYPEDVGRAPTLTRKLKEAITALKIEALYSKDEILETYLNTVP FLYNAYGIEMAARTYFDKSADKLTVLESATLIGMLKGTSYYNPVLNPERAQARRNVVLAQMEKRGKLSSRDFDTLSKRPL RIRFERQLEAAGPAPHLAQQLRKQLIDWADRNGYSLYADGLVIRTTIDFRLQTLANQAVARQGRQLQSVADGAWGPRVWN ARSPLVQTFVRESAQYAAAVAKGMSEDDALKSLLADADFMRKLRQDKTRVQAGFLAMDPRTGQVRAWVGSRDFAQDPFDH VQAARRQPGSTFKPFVYGAAFAKGALPTDTLIDQAVEIPLGGGRMWRPTDEGAAPSGEPMTLSDGLAYSKNTITAQLMQR VGPERVADLARAMGVRESPLDAVPSLALGTSPVTLKEMVAAYGTIAEAGRYIAPTVITRIEDKNGKVLEDFSPAVPERVL GLGPAQMLRNALRAVVDKGTGAAIRSRYGITADVAGKTGTTQDAADGWFLLMHPQLVAGAWAGFNDGRVTLRSDYWGQGA HSALPMVGDVFQQALRSRVIDPGEKFIDQEESSWVGQAVDGVRQWALSVYDLFGRRTDAQAGGAGAEPPARAPVPSASAP ASAPADTRPEITEAPLTPLQDATPSAPYVPPAEVDLPAENAGSAPPPATPGGSGTLPPVTTDPPGSTVPGTVPGASPGPS GGVGGAGGSNGPDGTGAAPSVEVAPVQRGTVVPGSAQQPFFVESRP
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=306, Percent_Identity=40.8496732026144, Blast_Score=199, Evalue=7e-52, Organism=Escherichia coli, GI1786343, Length=574, Percent_Identity=28.9198606271777, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI1788867, Length=661, Percent_Identity=27.5340393343419, Blast_Score=146, Evalue=6e-36, Organism=Escherichia coli, GI1789601, Length=185, Percent_Identity=35.1351351351351, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 90567; Mature: 90567
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLWALAAVPAALLVYTLLLWPFTPAISDIRKAKTEQPAQLVSADGRLLAEYRWVNREWV CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCEE ALEDIAPSVVDALIATEDHRFYDHFGLDWRRTGSALIRTLGGNKQGGSTITQQLARNLYP EHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCH EDVGRAPTLTRKLKEAITALKIEALYSKDEILETYLNTVPFLYNAYGIEMAARTYFDKSA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DKLTVLESATLIGMLKGTSYYNPVLNPERAQARRNVVLAQMEKRGKLSSRDFDTLSKRPL CCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCE RIRFERQLEAAGPAPHLAQQLRKQLIDWADRNGYSLYADGLVIRTTIDFRLQTLANQAVA EEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEHHHHHHHHHHHHHH RQGRQLQSVADGAWGPRVWNARSPLVQTFVRESAQYAAAVAKGMSEDDALKSLLADADFM HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RKLRQDKTRVQAGFLAMDPRTGQVRAWVGSRDFAQDPFDHVQAARRQPGSTFKPFVYGAA HHHHHHHHHHHHCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH FAKGALPTDTLIDQAVEIPLGGGRMWRPTDEGAAPSGEPMTLSDGLAYSKNTITAQLMQR HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH VGPERVADLARAMGVRESPLDAVPSLALGTSPVTLKEMVAAYGTIAEAGRYIAPTVITRI HCHHHHHHHHHHHCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE EDKNGKVLEDFSPAVPERVLGLGPAQMLRNALRAVVDKGTGAAIRSRYGITADVAGKTGT ECCCCCEEHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCC TQDAADGWFLLMHPQLVAGAWAGFNDGRVTLRSDYWGQGAHSALPMVGDVFQQALRSRVI CCCCCCCEEEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC DPGEKFIDQEESSWVGQAVDGVRQWALSVYDLFGRRTDAQAGGAGAEPPARAPVPSASAP CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ASAPADTRPEITEAPLTPLQDATPSAPYVPPAEVDLPAENAGSAPPPATPGGSGTLPPVT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TDPPGSTVPGTVPGASPGPSGGVGGAGGSNGPDGTGAAPSVEVAPVQRGTVVPGSAQQPF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCE FVESRP EECCCC >Mature Secondary Structure MLLWALAAVPAALLVYTLLLWPFTPAISDIRKAKTEQPAQLVSADGRLLAEYRWVNREWV CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCEE ALEDIAPSVVDALIATEDHRFYDHFGLDWRRTGSALIRTLGGNKQGGSTITQQLARNLYP EHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCH EDVGRAPTLTRKLKEAITALKIEALYSKDEILETYLNTVPFLYNAYGIEMAARTYFDKSA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DKLTVLESATLIGMLKGTSYYNPVLNPERAQARRNVVLAQMEKRGKLSSRDFDTLSKRPL CCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCE RIRFERQLEAAGPAPHLAQQLRKQLIDWADRNGYSLYADGLVIRTTIDFRLQTLANQAVA EEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEHHHHHHHHHHHHHH RQGRQLQSVADGAWGPRVWNARSPLVQTFVRESAQYAAAVAKGMSEDDALKSLLADADFM HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RKLRQDKTRVQAGFLAMDPRTGQVRAWVGSRDFAQDPFDHVQAARRQPGSTFKPFVYGAA HHHHHHHHHHHHCEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH FAKGALPTDTLIDQAVEIPLGGGRMWRPTDEGAAPSGEPMTLSDGLAYSKNTITAQLMQR HHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH VGPERVADLARAMGVRESPLDAVPSLALGTSPVTLKEMVAAYGTIAEAGRYIAPTVITRI HCHHHHHHHHHHHCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE EDKNGKVLEDFSPAVPERVLGLGPAQMLRNALRAVVDKGTGAAIRSRYGITADVAGKTGT ECCCCCEEHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCC TQDAADGWFLLMHPQLVAGAWAGFNDGRVTLRSDYWGQGAHSALPMVGDVFQQALRSRVI CCCCCCCEEEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC DPGEKFIDQEESSWVGQAVDGVRQWALSVYDLFGRRTDAQAGGAGAEPPARAPVPSASAP CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ASAPADTRPEITEAPLTPLQDATPSAPYVPPAEVDLPAENAGSAPPPATPGGSGTLPPVT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TDPPGSTVPGTVPGASPGPSGGVGGAGGSNGPDGTGAAPSVEVAPVQRGTVVPGSAQQPF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCE FVESRP EECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]