Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is aspC [H]
Identifier: 120611111
GI number: 120611111
Start: 2663673
End: 2664869
Strand: Reverse
Name: aspC [H]
Synonym: Aave_2440
Alternate gene names: 120611111
Gene position: 2664869-2663673 (Counterclockwise)
Preceding gene: 120611126
Following gene: 120611110
Centisome position: 49.78
GC content: 65.16
Gene sequence:
>1197_bases ATGTCTCTCTTCACCGCCGTCGAAATGGCACCGCGCGACCCGATCCTGGGTCTGAACGAGCAGTACGCTGCCGACACCAA CCCCAACAAGGTCAACCTGGGGGTGGGCGTGTATTTCGACGACAACGGCAAGCTGCCCCTGCTCCAATGCGTCCAGGCCG CGGAAAAGGCCATGATGGACAAGCCTTCGGCACGCGGCTACCTGCCCATCGACGGCATCGTCGCCTATGACAACGCCGTC AAGTCGCTGGTGTTCGGCGAAGGCAGCGAGCCCGTCACCTCCGGCCGCGTTGCGACCGTGCAGGCCATCGGCGGCACGGG CGGCCTGAAGATCGGCGCCGATTTCCTGAAGAAGGTCAGCCCCGACGCCAAGGTGCTGATTTCCGATCCGAGCTGGGAGA ACCACCGCGCGCTGTTCACCAACGCCGGCTTCGTGGTCGATACCTACACCTACTACGACGCGGCCAAGCGCGGCGTGAAC TTCGAAGGCATGCTGGCCAGCCTCAAGGCCGCCGCGCCCGGCACCATCGTCGTGCTGCACGCCTGCTGCCACAACCCCAC CGGCTACGACATCACCTCCGAGCAGTGGGACCAGGTGGTGGCCGTGGTCAAGGCCCAGGGCCTGACGGCCTTCCTCGACA TGGCCTACCAGGGCTTCGGCCACGGCATCCAGGAAGACGGTGCGGTGATCCAGAAGTTCGTCGCCGCCGGCCTGAGCTTC TTCGTTTCCACCTCTTTCTCCAAGAGCTTCAGCCTGTATGGCGAGCGCGTGGGCGGCCTGTCCGTGCTGTGCGCCGACAA GGAAGAAGCCTCCCGCGTGCTGAGCCAGCTGAAGATCGTGATCCGCACCAACTACTCCAATCCGCCCACGCATGGCGGCG CGGTGGTGGCCGCGGTGCTGGGCAACCCCGAGCTGCGCGCCCTGTGGGAGAAGGAACTGGGCGAGATGCGCGTGCGCATC AAGGCCATGCGCCAGAAGCTGGTGGACGGCCTCAAGGCCGCCGGCGTGCAGCAGGACATGTCCTTCATCACGCAGCAGAT CGGCATGTTCAGCTACTCGGGCCTGTCCAAGGACCAGATGGTGCGCCTGCGCACCGAGTTCGGCGTGTACGGCACCGACA CCGGCCGCATGTGCGTGGCCGCGCTCAACAGCAAGAACATCGACTACGTCTGCCAGTCGATCGCCAAGGTGATCTGA
Upstream 100 bases:
>100_bases TGGCTCAGGGTGGAGCCCTTAAAATCGGGGCGACCTGGCAGAGTACAACAGGCCGGGTCTCCCGTTCCGACATCCTTCGT CGATACCCCAAGGAAACTCC
Downstream 100 bases:
>100_bases CCCCGCCCGCGGGCGCCAGCATGGGCAGGAAGCCGCCTCCGGGCGGCTTTTTCATGGGCGCACGGCGCGGCATGCCTCCC TGCCCTGTCCGGGCGATACT
Product: aromatic amino acid aminotransferase
Products: NA
Alternate protein names: AspAT; Transaminase A [H]
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MSLFTAVEMAPRDPILGLNEQYAADTNPNKVNLGVGVYFDDNGKLPLLQCVQAAEKAMMDKPSARGYLPIDGIVAYDNAV KSLVFGEGSEPVTSGRVATVQAIGGTGGLKIGADFLKKVSPDAKVLISDPSWENHRALFTNAGFVVDTYTYYDAAKRGVN FEGMLASLKAAAPGTIVVLHACCHNPTGYDITSEQWDQVVAVVKAQGLTAFLDMAYQGFGHGIQEDGAVIQKFVAAGLSF FVSTSFSKSFSLYGERVGGLSVLCADKEEASRVLSQLKIVIRTNYSNPPTHGGAVVAAVLGNPELRALWEKELGEMRVRI KAMRQKLVDGLKAAGVQQDMSFITQQIGMFSYSGLSKDQMVRLRTEFGVYGTDTGRMCVAALNSKNIDYVCQSIAKVI
Sequences:
>Translated_398_residues MSLFTAVEMAPRDPILGLNEQYAADTNPNKVNLGVGVYFDDNGKLPLLQCVQAAEKAMMDKPSARGYLPIDGIVAYDNAV KSLVFGEGSEPVTSGRVATVQAIGGTGGLKIGADFLKKVSPDAKVLISDPSWENHRALFTNAGFVVDTYTYYDAAKRGVN FEGMLASLKAAAPGTIVVLHACCHNPTGYDITSEQWDQVVAVVKAQGLTAFLDMAYQGFGHGIQEDGAVIQKFVAAGLSF FVSTSFSKSFSLYGERVGGLSVLCADKEEASRVLSQLKIVIRTNYSNPPTHGGAVVAAVLGNPELRALWEKELGEMRVRI KAMRQKLVDGLKAAGVQQDMSFITQQIGMFSYSGLSKDQMVRLRTEFGVYGTDTGRMCVAALNSKNIDYVCQSIAKVI >Mature_397_residues SLFTAVEMAPRDPILGLNEQYAADTNPNKVNLGVGVYFDDNGKLPLLQCVQAAEKAMMDKPSARGYLPIDGIVAYDNAVK SLVFGEGSEPVTSGRVATVQAIGGTGGLKIGADFLKKVSPDAKVLISDPSWENHRALFTNAGFVVDTYTYYDAAKRGVNF EGMLASLKAAAPGTIVVLHACCHNPTGYDITSEQWDQVVAVVKAQGLTAFLDMAYQGFGHGIQEDGAVIQKFVAAGLSFF VSTSFSKSFSLYGERVGGLSVLCADKEEASRVLSQLKIVIRTNYSNPPTHGGAVVAAVLGNPELRALWEKELGEMRVRIK AMRQKLVDGLKAAGVQQDMSFITQQIGMFSYSGLSKDQMVRLRTEFGVYGTDTGRMCVAALNSKNIDYVCQSIAKVI
Specific function: Biosynthesis of Phe, Tyr, Asp and Leu. [C]
COG id: COG1448
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI73486658, Length=396, Percent_Identity=43.9393939393939, Blast_Score=347, Evalue=1e-95, Organism=Homo sapiens, GI4504067, Length=405, Percent_Identity=41.2345679012346, Blast_Score=313, Evalue=3e-85, Organism=Homo sapiens, GI117414139, Length=402, Percent_Identity=28.3582089552239, Blast_Score=179, Evalue=3e-45, Organism=Escherichia coli, GI1790488, Length=397, Percent_Identity=50.3778337531486, Blast_Score=411, Evalue=1e-116, Organism=Escherichia coli, GI1787159, Length=396, Percent_Identity=44.9494949494949, Blast_Score=390, Evalue=1e-109, Organism=Caenorhabditis elegans, GI71981858, Length=398, Percent_Identity=41.2060301507538, Blast_Score=347, Evalue=5e-96, Organism=Caenorhabditis elegans, GI25147133, Length=397, Percent_Identity=40.3022670025189, Blast_Score=317, Evalue=1e-86, Organism=Caenorhabditis elegans, GI17569539, Length=401, Percent_Identity=38.4039900249377, Blast_Score=286, Evalue=1e-77, Organism=Caenorhabditis elegans, GI17569537, Length=398, Percent_Identity=31.9095477386935, Blast_Score=195, Evalue=3e-50, Organism=Caenorhabditis elegans, GI25147136, Length=213, Percent_Identity=39.4366197183099, Blast_Score=171, Evalue=8e-43, Organism=Caenorhabditis elegans, GI17550384, Length=268, Percent_Identity=33.2089552238806, Blast_Score=168, Evalue=4e-42, Organism=Saccharomyces cerevisiae, GI6323055, Length=406, Percent_Identity=38.423645320197, Blast_Score=292, Evalue=7e-80, Organism=Saccharomyces cerevisiae, GI6322743, Length=435, Percent_Identity=33.3333333333333, Blast_Score=231, Evalue=1e-61, Organism=Drosophila melanogaster, GI24580972, Length=398, Percent_Identity=44.2211055276382, Blast_Score=347, Evalue=8e-96, Organism=Drosophila melanogaster, GI24580970, Length=398, Percent_Identity=44.2211055276382, Blast_Score=347, Evalue=1e-95, Organism=Drosophila melanogaster, GI19920542, Length=391, Percent_Identity=44.5012787723785, Blast_Score=341, Evalue=5e-94, Organism=Drosophila melanogaster, GI24654046, Length=401, Percent_Identity=39.4014962593516, Blast_Score=306, Evalue=2e-83, Organism=Drosophila melanogaster, GI19922362, Length=401, Percent_Identity=39.4014962593516, Blast_Score=305, Evalue=3e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR000796 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.1 [H]
Molecular weight: Translated: 42769; Mature: 42638
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFTAVEMAPRDPILGLNEQYAADTNPNKVNLGVGVYFDDNGKLPLLQCVQAAEKAMMD CCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHC KPSARGYLPIDGIVAYDNAVKSLVFGEGSEPVTSGRVATVQAIGGTGGLKIGADFLKKVS CCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEECHHHHHHCC PDAKVLISDPSWENHRALFTNAGFVVDTYTYYDAAKRGVNFEGMLASLKAAAPGTIVVLH CCCEEEEECCCCCCCEEEEECCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEE ACCHNPTGYDITSEQWDQVVAVVKAQGLTAFLDMAYQGFGHGIQEDGAVIQKFVAAGLSF EHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH FVSTSFSKSFSLYGERVGGLSVLCADKEEASRVLSQLKIVIRTNYSNPPTHGGAVVAAVL HHHHCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEE GNPELRALWEKELGEMRVRIKAMRQKLVDGLKAAGVQQDMSFITQQIGMFSYSGLSKDQM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHH VRLRTEFGVYGTDTGRMCVAALNSKNIDYVCQSIAKVI EEEEHHCCCEECCCCCEEEEEECCCCHHHHHHHHHHHC >Mature Secondary Structure SLFTAVEMAPRDPILGLNEQYAADTNPNKVNLGVGVYFDDNGKLPLLQCVQAAEKAMMD CCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHC KPSARGYLPIDGIVAYDNAVKSLVFGEGSEPVTSGRVATVQAIGGTGGLKIGADFLKKVS CCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEECHHHHHHCC PDAKVLISDPSWENHRALFTNAGFVVDTYTYYDAAKRGVNFEGMLASLKAAAPGTIVVLH CCCEEEEECCCCCCCEEEEECCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEE ACCHNPTGYDITSEQWDQVVAVVKAQGLTAFLDMAYQGFGHGIQEDGAVIQKFVAAGLSF EHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH FVSTSFSKSFSLYGERVGGLSVLCADKEEASRVLSQLKIVIRTNYSNPPTHGGAVVAAVL HHHHCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEE GNPELRALWEKELGEMRVRIKAMRQKLVDGLKAAGVQQDMSFITQQIGMFSYSGLSKDQM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHH VRLRTEFGVYGTDTGRMCVAALNSKNIDYVCQSIAKVI EEEEHHCCCEECCCCCEEEEEECCCCHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 8808952 [H]