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The map label for this gene is yfdE [H]

Identifier: 120611110

GI number: 120611110

Start: 2662677

End: 2663567

Strand: Reverse

Name: yfdE [H]

Synonym: Aave_2439

Alternate gene names: 120611110

Gene position: 2663567-2662677 (Counterclockwise)

Preceding gene: 120611111

Following gene: 120611109

Centisome position: 49.76

GC content: 72.5

Gene sequence:

>891_bases
ATGGCCTCCTTACCCCACTCCAACGGCGCGCTGGCCGGTTTCCGCATTCTCAGCATCGCCCTGAACCTTCCGGGACCTGC
GGCCCTGGCGCGGTGCCGCGACGAGGGCGCCTCGTGCACGAAGCTCGAGCCGCCCGCGCCCTCGGGCAGGCCCAGCGCGG
ATCCCATGGCGCTCTATTGCCCGCAGGCCTATGCGGAGCTGCATGCCGGCGTCCGCGTGCTCCAGGCCGACTTGAAAACG
CCTGAGGGACAGGCGCTGCTGCACCAGGAACTGGCGGCCACGGATGTGCTGATCACCTCGTTCCGCCCCTCGGCGCTGCA
ACGGCTCGGGCTGGACTGGCCCACATTGCAGGACCGCCACCCTGCGCTGTCGCTGGTCCGGATCGTGGGCGGCCCGGGCA
ATGCCGCGGAAGCGCCGGGCCACGATCTCACCTACCAGGCGGAGGCAGGGCTTCTGCCCGCGGGAGAGTTGCTCCCCGCC
AGCCTGCATGCGGACATGGCGGGCGCGCTACTGGCGTCCGAGGCGGTGTCGCGTGCATTGCTCGCCAGGCATTCCACGGG
AAGGGGCACGGAACACGAGATCGCACTCGCCACAGCGGCCCGGTGGCTGGCGCTGCCCAGGACCTGGGGGCTGGCCCTCC
CTGCCGGCGACGTGGGGGGCGCCCACGCGGGATACCGCGTCTATGGATGCGCGGACGGGCGGGTGGCGCTGGCGGCCCTG
GAGCCGCATTTCATGGCCCGGCTGTGCGCCGCGGCCGGCCTGCCGCCGGATGCCGGCCCGCGCGATGCGTCCACCCGGGA
AGCCATCGCCGGCTTCCTGCGCCATCGTCGCCGGGAGGAGCTGGACCGCTGGGCCCGGCAGGAGGACATCCCCCTACATA
CCCTCGACTGA

Upstream 100 bases:

>100_bases
CCCGCGGGCGCCAGCATGGGCAGGAAGCCGCCTCCGGGCGGCTTTTTCATGGGCGCACGGCGCGGCATGCCTCCCTGCCC
TGTCCGGGCGATACTGGGGC

Downstream 100 bases:

>100_bases
CCGGCGCGGGCTGCCGGACATCGGCGCCGTCCGACAACACGCCGCTGGGTTGCCCTACCTGGCGGAAGCAACGCGGCATT
GCCCAATCGCTGGAGTCGCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MASLPHSNGALAGFRILSIALNLPGPAALARCRDEGASCTKLEPPAPSGRPSADPMALYCPQAYAELHAGVRVLQADLKT
PEGQALLHQELAATDVLITSFRPSALQRLGLDWPTLQDRHPALSLVRIVGGPGNAAEAPGHDLTYQAEAGLLPAGELLPA
SLHADMAGALLASEAVSRALLARHSTGRGTEHEIALATAARWLALPRTWGLALPAGDVGGAHAGYRVYGCADGRVALAAL
EPHFMARLCAAAGLPPDAGPRDASTREAIAGFLRHRRREELDRWARQEDIPLHTLD

Sequences:

>Translated_296_residues
MASLPHSNGALAGFRILSIALNLPGPAALARCRDEGASCTKLEPPAPSGRPSADPMALYCPQAYAELHAGVRVLQADLKT
PEGQALLHQELAATDVLITSFRPSALQRLGLDWPTLQDRHPALSLVRIVGGPGNAAEAPGHDLTYQAEAGLLPAGELLPA
SLHADMAGALLASEAVSRALLARHSTGRGTEHEIALATAARWLALPRTWGLALPAGDVGGAHAGYRVYGCADGRVALAAL
EPHFMARLCAAAGLPPDAGPRDASTREAIAGFLRHRRREELDRWARQEDIPLHTLD
>Mature_295_residues
ASLPHSNGALAGFRILSIALNLPGPAALARCRDEGASCTKLEPPAPSGRPSADPMALYCPQAYAELHAGVRVLQADLKTP
EGQALLHQELAATDVLITSFRPSALQRLGLDWPTLQDRHPALSLVRIVGGPGNAAEAPGHDLTYQAEAGLLPAGELLPAS
LHADMAGALLASEAVSRALLARHSTGRGTEHEIALATAARWLALPRTWGLALPAGDVGGAHAGYRVYGCADGRVALAALE
PHFMARLCAAAGLPPDAGPRDASTREAIAGFLRHRRREELDRWARQEDIPLHTLD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=272, Percent_Identity=29.7794117647059, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI266456254, Length=272, Percent_Identity=29.7794117647059, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI266458393, Length=261, Percent_Identity=29.8850574712644, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI266458397, Length=252, Percent_Identity=29.7619047619048, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI300863128, Length=304, Percent_Identity=23.0263157894737, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI300863124, Length=304, Percent_Identity=23.0263157894737, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87082093, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=297, Percent_Identity=26.5993265993266, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=265, Percent_Identity=25.6603773584906, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24585488, Length=265, Percent_Identity=30.5660377358491, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 31122; Mature: 30991

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLPHSNGALAGFRILSIALNLPGPAALARCRDEGASCTKLEPPAPSGRPSADPMALYC
CCCCCCCCCCHHHHEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEC
PQAYAELHAGVRVLQADLKTPEGQALLHQELAATDVLITSFRPSALQRLGLDWPTLQDRH
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
PALSLVRIVGGPGNAAEAPGHDLTYQAEAGLLPAGELLPASLHADMAGALLASEAVSRAL
CCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
LARHSTGRGTEHEIALATAARWLALPRTWGLALPAGDVGGAHAGYRVYGCADGRVALAAL
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEC
EPHFMARLCAAAGLPPDAGPRDASTREAIAGFLRHRRREELDRWARQEDIPLHTLD
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ASLPHSNGALAGFRILSIALNLPGPAALARCRDEGASCTKLEPPAPSGRPSADPMALYC
CCCCCCCCCHHHHEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEC
PQAYAELHAGVRVLQADLKTPEGQALLHQELAATDVLITSFRPSALQRLGLDWPTLQDRH
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
PALSLVRIVGGPGNAAEAPGHDLTYQAEAGLLPAGELLPASLHADMAGALLASEAVSRAL
CCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
LARHSTGRGTEHEIALATAARWLALPRTWGLALPAGDVGGAHAGYRVYGCADGRVALAAL
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEC
EPHFMARLCAAAGLPPDAGPRDASTREAIAGFLRHRRREELDRWARQEDIPLHTLD
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]