Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120611101
Identifier: 120611101
GI number: 120611101
Start: 2651514
End: 2653082
Strand: Direct
Name: 120611101
Synonym: Aave_2430
Alternate gene names: NA
Gene position: 2651514-2653082 (Clockwise)
Preceding gene: 120611100
Following gene: 120611102
Centisome position: 49.54
GC content: 70.62
Gene sequence:
>1569_bases ATGACACAGACCGCATCTTCCTCCGCTTCCCTTGTCGAGCTGACCGCCCCCGAGCTGCGCCTGCGGATCGCCCGCCGCGA AATCTCGCCCGTCGAACTGCTCGAGGCCTGCATCGCACGCATCGAGGCCCTCAACCCCTATGTGAACGCCATCACCGCCA CCTGCTACGACCGCGCCCGGAACGAGGCGCGCGAGGCGGAGCGGGCAGTGCTGCGCGGCGATGTCCTCGGACTGCTGCAC GGCCTGCCACTGGGCGTGAAGGACCTGGAGGCCACGCAGGGCCTGCTGACCACCTATGGCTCGCAGATCTACCGCGAGCA CATTCCCGCGGAAGACAACGTGCTGGTCGCGCGCCTGCGCCGCGCCGGTGCGATCGTCACGGGCAAGACCAACATTCCCG AGATGGGTGCCGGCGCCAATTCCCGCAACACGGTATGGGGTGCCACAGGCAACCCCTTCGATCCCCGCCTGAACGCGGGG GGCTCGTCCGGCGGCTCGGCCGCGGCCCTGGCCTGCGACATGCTGCCCGTCTGCACCGGTTCAGACACCGGCGGCTCGCT GCGCATTCCCGCCGCCAAGTGCGGCGTGGTGGGGTTCCGGCCGTCGCCTGGCGTGGTGCCGAGCTCCCGCAAGCTGCTGG GCTGGACGCCGATCTCCGTCGTGGGGCCCATGGGCCGCACGGTGGAGGAGGCCTGCCTGCAGCTCGCGGCCACGGCGGGC ATGTCGGCGGGCGATCCGCTCAGCTACCCGCTGGATCCTGCCGTATTCCTGTCCCTGCCCGAGGTGGACCTCTCCACGCT GCGCGTCGGGTACACGGAGGATTTCGGTGCCTGTGCCGTGGACGACGGCATCCGTGAGACGTTCCGCGGCAAGATCGCCG CGATGCGGCACCTGTTCCGCAGTTGCGATCCCCTGTCGCTGGACCTGGGGGACGTGCACCGCTGCTTCGACGTGCTGCGC GCCGAAGCCTTCGTGGCGGGCACCCGCGAGGCCTACGAGCGCGATCCCGCCAGCCTGGGGCCGAACACCCGCGCCAACTA CGAGATGGGCGCTGCCATGACGCTCATCGACAGCGCCTGGGCGCAGGCGGAACAGACGCGCATCCTCGCGCGGTTCCAGA AGGCATTCGAATCGTTCGACATCATCCTTGCCCCGACCACGCCGGTATCCCCGTTCCCGTGGACGGAGCTCTACGCCAGC CACATCAACGGCGAACCCCAGGCCAACTACTACCGCTGGCTGGCCCTGACCTACGTCACCACGCTGACCACCCATCCCGC CCTCAGCCTGCCTTGCGGGCGGGATGGCCGCGACATGCCGTTCGGCCTGCAGGTGGTGGGCCGCTTCCGGGACGACCTCG GCACCCTTGCCATCGGCCGTGCGATGGAACAGTCCTTCGCCGGCATCGAGGGACTGCAGCGCCCGCGGCCGGCGCTGGAC CGGCTGGCCCCGGTCGAGCCGGCGCTGACTTCCCTCGTCACCACTGCACCCGACGCACGCGATGCACGCGGCGAGCCGCG CCCGGACGGCTCGGGCAGCCGGGGGGCCGCCGAGGCGTCGGCGGTCTGA
Upstream 100 bases:
>100_bases CCCAGCGCGCCGGCATCACCGTCGACTGACCACCTGACCGGTTTTTCCGGTATTTTCAAGCCTCCAGGAGACAACGCCGC CTTCCAGGGCGGCGCACCAC
Downstream 100 bases:
>100_bases CGGATTGCGGTCGATCGGCAGGAAAGGAATCGACATGACCGAACGGGTGGACTTCCTCGTGGTGGGGGCCGGCATTGCCG GCGCCTCGGTCGGCTGGGAA
Product: amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MTQTASSSASLVELTAPELRLRIARREISPVELLEACIARIEALNPYVNAITATCYDRARNEAREAERAVLRGDVLGLLH GLPLGVKDLEATQGLLTTYGSQIYREHIPAEDNVLVARLRRAGAIVTGKTNIPEMGAGANSRNTVWGATGNPFDPRLNAG GSSGGSAAALACDMLPVCTGSDTGGSLRIPAAKCGVVGFRPSPGVVPSSRKLLGWTPISVVGPMGRTVEEACLQLAATAG MSAGDPLSYPLDPAVFLSLPEVDLSTLRVGYTEDFGACAVDDGIRETFRGKIAAMRHLFRSCDPLSLDLGDVHRCFDVLR AEAFVAGTREAYERDPASLGPNTRANYEMGAAMTLIDSAWAQAEQTRILARFQKAFESFDIILAPTTPVSPFPWTELYAS HINGEPQANYYRWLALTYVTTLTTHPALSLPCGRDGRDMPFGLQVVGRFRDDLGTLAIGRAMEQSFAGIEGLQRPRPALD RLAPVEPALTSLVTTAPDARDARGEPRPDGSGSRGAAEASAV
Sequences:
>Translated_522_residues MTQTASSSASLVELTAPELRLRIARREISPVELLEACIARIEALNPYVNAITATCYDRARNEAREAERAVLRGDVLGLLH GLPLGVKDLEATQGLLTTYGSQIYREHIPAEDNVLVARLRRAGAIVTGKTNIPEMGAGANSRNTVWGATGNPFDPRLNAG GSSGGSAAALACDMLPVCTGSDTGGSLRIPAAKCGVVGFRPSPGVVPSSRKLLGWTPISVVGPMGRTVEEACLQLAATAG MSAGDPLSYPLDPAVFLSLPEVDLSTLRVGYTEDFGACAVDDGIRETFRGKIAAMRHLFRSCDPLSLDLGDVHRCFDVLR AEAFVAGTREAYERDPASLGPNTRANYEMGAAMTLIDSAWAQAEQTRILARFQKAFESFDIILAPTTPVSPFPWTELYAS HINGEPQANYYRWLALTYVTTLTTHPALSLPCGRDGRDMPFGLQVVGRFRDDLGTLAIGRAMEQSFAGIEGLQRPRPALD RLAPVEPALTSLVTTAPDARDARGEPRPDGSGSRGAAEASAV >Mature_521_residues TQTASSSASLVELTAPELRLRIARREISPVELLEACIARIEALNPYVNAITATCYDRARNEAREAERAVLRGDVLGLLHG LPLGVKDLEATQGLLTTYGSQIYREHIPAEDNVLVARLRRAGAIVTGKTNIPEMGAGANSRNTVWGATGNPFDPRLNAGG SSGGSAAALACDMLPVCTGSDTGGSLRIPAAKCGVVGFRPSPGVVPSSRKLLGWTPISVVGPMGRTVEEACLQLAATAGM SAGDPLSYPLDPAVFLSLPEVDLSTLRVGYTEDFGACAVDDGIRETFRGKIAAMRHLFRSCDPLSLDLGDVHRCFDVLRA EAFVAGTREAYERDPASLGPNTRANYEMGAAMTLIDSAWAQAEQTRILARFQKAFESFDIILAPTTPVSPFPWTELYASH INGEPQANYYRWLALTYVTTLTTHPALSLPCGRDGRDMPFGLQVVGRFRDDLGTLAIGRAMEQSFAGIEGLQRPRPALDR LAPVEPALTSLVTTAPDARDARGEPRPDGSGSRGAAEASAV
Specific function: Unknown
COG id: COG0154
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amidase family [H]
Homologues:
Organism=Homo sapiens, GI222831590, Length=513, Percent_Identity=26.3157894736842, Blast_Score=132, Evalue=8e-31, Organism=Homo sapiens, GI195972892, Length=247, Percent_Identity=34.0080971659919, Blast_Score=122, Evalue=6e-28, Organism=Homo sapiens, GI166795287, Length=262, Percent_Identity=31.6793893129771, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17537465, Length=504, Percent_Identity=26.5873015873016, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17543272, Length=449, Percent_Identity=25.1670378619154, Blast_Score=93, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17538252, Length=189, Percent_Identity=31.7460317460317, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17556264, Length=309, Percent_Identity=27.831715210356, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71990152, Length=317, Percent_Identity=28.7066246056782, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538254, Length=201, Percent_Identity=34.3283582089552, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17556276, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17556278, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323950, Length=416, Percent_Identity=24.2788461538462, Blast_Score=87, Evalue=9e-18, Organism=Saccharomyces cerevisiae, GI6319685, Length=399, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6320448, Length=232, Percent_Identity=28.0172413793103, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI21356731, Length=489, Percent_Identity=27.19836400818, Blast_Score=140, Evalue=3e-33, Organism=Drosophila melanogaster, GI24648435, Length=498, Percent_Identity=25.9036144578313, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24648437, Length=498, Percent_Identity=25.9036144578313, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI45550774, Length=498, Percent_Identity=25.9036144578313, Blast_Score=130, Evalue=3e-30, Organism=Drosophila melanogaster, GI24652985, Length=508, Percent_Identity=27.3622047244095, Blast_Score=129, Evalue=4e-30, Organism=Drosophila melanogaster, GI19922090, Length=508, Percent_Identity=27.3622047244095, Blast_Score=129, Evalue=4e-30, Organism=Drosophila melanogaster, GI24652981, Length=508, Percent_Identity=27.3622047244095, Blast_Score=129, Evalue=4e-30, Organism=Drosophila melanogaster, GI24652983, Length=508, Percent_Identity=27.3622047244095, Blast_Score=129, Evalue=4e-30, Organism=Drosophila melanogaster, GI24648113, Length=512, Percent_Identity=26.5625, Blast_Score=109, Evalue=4e-24, Organism=Drosophila melanogaster, GI24644968, Length=504, Percent_Identity=24.8015873015873, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24648441, Length=421, Percent_Identity=24.9406175771971, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI24648439, Length=421, Percent_Identity=24.9406175771971, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI161078093, Length=514, Percent_Identity=26.0700389105058, Blast_Score=92, Evalue=7e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000120 - InterPro: IPR020556 [H]
Pfam domain/function: PF01425 Amidase [H]
EC number: =3.5.1.4 [H]
Molecular weight: Translated: 55606; Mature: 55474
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTASSSASLVELTAPELRLRIARREISPVELLEACIARIEALNPYVNAITATCYDRAR CCCCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH NEAREAERAVLRGDVLGLLHGLPLGVKDLEATQGLLTTYGSQIYREHIPAEDNVLVARLR HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH RAGAIVTGKTNIPEMGAGANSRNTVWGATGNPFDPRLNAGGSSGGSAAALACDMLPVCTG HCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCEECCC SDTGGSLRIPAAKCGVVGFRPSPGVVPSSRKLLGWTPISVVGPMGRTVEEACLQLAATAG CCCCCEEECCHHHCCEEECCCCCCCCCCCCCEEECCCHHHHCCCCCHHHHHHHHHHHHCC MSAGDPLSYPLDPAVFLSLPEVDLSTLRVGYTEDFGACAVDDGIRETFRGKIAAMRHLFR CCCCCCCCCCCCCCEEEECCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SCDPLSLDLGDVHRCFDVLRAEAFVAGTREAYERDPASLGPNTRANYEMGAAMTLIDSAW CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH AQAEQTRILARFQKAFESFDIILAPTTPVSPFPWTELYASHINGEPQANYYRWLALTYVT HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH TLTTHPALSLPCGRDGRDMPFGLQVVGRFRDDLGTLAIGRAMEQSFAGIEGLQRPRPALD HHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RLAPVEPALTSLVTTAPDARDARGEPRPDGSGSRGAAEASAV HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TQTASSSASLVELTAPELRLRIARREISPVELLEACIARIEALNPYVNAITATCYDRAR CCCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH NEAREAERAVLRGDVLGLLHGLPLGVKDLEATQGLLTTYGSQIYREHIPAEDNVLVARLR HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH RAGAIVTGKTNIPEMGAGANSRNTVWGATGNPFDPRLNAGGSSGGSAAALACDMLPVCTG HCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCEECCC SDTGGSLRIPAAKCGVVGFRPSPGVVPSSRKLLGWTPISVVGPMGRTVEEACLQLAATAG CCCCCEEECCHHHCCEEECCCCCCCCCCCCCEEECCCHHHHCCCCCHHHHHHHHHHHHCC MSAGDPLSYPLDPAVFLSLPEVDLSTLRVGYTEDFGACAVDDGIRETFRGKIAAMRHLFR CCCCCCCCCCCCCCEEEECCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SCDPLSLDLGDVHRCFDVLRAEAFVAGTREAYERDPASLGPNTRANYEMGAAMTLIDSAW CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH AQAEQTRILARFQKAFESFDIILAPTTPVSPFPWTELYASHINGEPQANYYRWLALTYVT HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH TLTTHPALSLPCGRDGRDMPFGLQVVGRFRDDLGTLAIGRAMEQSFAGIEGLQRPRPALD HHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RLAPVEPALTSLVTTAPDARDARGEPRPDGSGSRGAAEASAV HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]