Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is intR [H]
Identifier: 120610997
GI number: 120610997
Start: 2554496
End: 2555707
Strand: Reverse
Name: intR [H]
Synonym: Aave_2325
Alternate gene names: 120610997
Gene position: 2555707-2554496 (Counterclockwise)
Preceding gene: 120610998
Following gene: 120610991
Centisome position: 47.75
GC content: 66.83
Gene sequence:
>1212_bases ATGGGCCGCAAAGCATCATCCGGAGGTGTTAGACCACGCGGCAACCGCATAGAGGTCCGCTTCACCTGGGAGGGCAAACA GGTTTCGCCCACGCTGGACCTGCGGCCCACGGCCGCCAACCTGAAGCACGCGGCGCGACTGCGCGCGACGATCGTGGAGG AGATCAACCAGGGCAAGTTCCGCTTCGCCGAGCACTTCCCCGACTACAAGAACCTGACGGCCGTGCAGCCCGCCACGGAT GAGGAATCCCGCCTCTTCCGCGACTGGGCGAAGGTGTGGGGCCGGCTTTCGGCCCGTGGGCTGGAGCACTCCTCGCACGC CGTCTACCTCCGCCATCTGGCCGCCTACTGGCTCCCGGTCTTCGGCCACCTGCCGCCGGAGCGCATTACGCACGTCATGG TGCTCGAGCGACTGGCCGACCTGTCAGCCCCCCGCCTGGACGAGAAGACGGGCAAAACACGCCGCGCGCTGGCACGCAAG ACGCAGAACAACATCTTGATCCCGCTGCGGGGGGTGTTCGAGCTGATCTGCAAGGCCCGCACCGAGGTGGTGGACCCTAC CGACGGCATCGACAACCAGAAGGTGCAGAAGGCCATGCCCGACCCCTTCTCCCCCGATGAGGTGGAGGTGATCCTGCGCG CGCTGGAGGAGCAGGCCGGAAGCACATGGGCGGATTACTTCGAGTTCTCCTTCTTCGCCGGCTTCCGTGCGAGCGAGCAG ATCGCACTCCTCTGGGAGGATGTGGATCATCGCAGCCGGACGGCGCTGGTGTGGCGAACCAGGGTGCTGACCAAGGACAA GGACCGCACCAAGACCAATGTGGAACGGCAGGTGGAGCTGAACGATCGGGCCTACAACGCCATCCGGCGCCAGCGGGCCC GCACCGAGGCCGCCGGCCGGGAGGTGTTCTGGAACCCGAACACCGGCAAGCCCTTCATCGATGAGCAGTCGCAGCGTCGC GTCTGGCGCGCCGCCCTCCGGAAGGCGGGGGTGCGATACCGGGCGCCGAAGGAATGCCGCGACACCAGCGTGACGCTCGC GCTGATGGCCGGGGCGAACCCGATGTGGGTGGCCCTGCAGCATGGCCACAGCGTGCAGGTGATGATGCGGGACTATGCGA AGTGGATCCCGTCGGCCGACCGCGGGGCGAATCGCGCCGCCGTGAACGCTGCGATTTCTGGCCCGGCGCAGGACCAGAAA AAAGCGATTTAG
Upstream 100 bases:
>100_bases CAGTGGAAACCAAGATCCACCGCGGCGTGTGGGTCGAAGGCAAAGAGTACGTCCGGGCCCCGGACGGGAATGTTCTGATC GATATGGAGGGATACAACCG
Downstream 100 bases:
>100_bases GGATGGGTTAGGGATGGACTCCCGAGGCCGTGAGCCAGAAACAAAAAACCCCTAAGCGAATCAATCACTTAGGGGTTCAT GCTTTGGCGGAAACGGAGGG
Product: phage integrase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MGRKASSGGVRPRGNRIEVRFTWEGKQVSPTLDLRPTAANLKHAARLRATIVEEINQGKFRFAEHFPDYKNLTAVQPATD EESRLFRDWAKVWGRLSARGLEHSSHAVYLRHLAAYWLPVFGHLPPERITHVMVLERLADLSAPRLDEKTGKTRRALARK TQNNILIPLRGVFELICKARTEVVDPTDGIDNQKVQKAMPDPFSPDEVEVILRALEEQAGSTWADYFEFSFFAGFRASEQ IALLWEDVDHRSRTALVWRTRVLTKDKDRTKTNVERQVELNDRAYNAIRRQRARTEAAGREVFWNPNTGKPFIDEQSQRR VWRAALRKAGVRYRAPKECRDTSVTLALMAGANPMWVALQHGHSVQVMMRDYAKWIPSADRGANRAAVNAAISGPAQDQK KAI
Sequences:
>Translated_403_residues MGRKASSGGVRPRGNRIEVRFTWEGKQVSPTLDLRPTAANLKHAARLRATIVEEINQGKFRFAEHFPDYKNLTAVQPATD EESRLFRDWAKVWGRLSARGLEHSSHAVYLRHLAAYWLPVFGHLPPERITHVMVLERLADLSAPRLDEKTGKTRRALARK TQNNILIPLRGVFELICKARTEVVDPTDGIDNQKVQKAMPDPFSPDEVEVILRALEEQAGSTWADYFEFSFFAGFRASEQ IALLWEDVDHRSRTALVWRTRVLTKDKDRTKTNVERQVELNDRAYNAIRRQRARTEAAGREVFWNPNTGKPFIDEQSQRR VWRAALRKAGVRYRAPKECRDTSVTLALMAGANPMWVALQHGHSVQVMMRDYAKWIPSADRGANRAAVNAAISGPAQDQK KAI >Mature_402_residues GRKASSGGVRPRGNRIEVRFTWEGKQVSPTLDLRPTAANLKHAARLRATIVEEINQGKFRFAEHFPDYKNLTAVQPATDE ESRLFRDWAKVWGRLSARGLEHSSHAVYLRHLAAYWLPVFGHLPPERITHVMVLERLADLSAPRLDEKTGKTRRALARKT QNNILIPLRGVFELICKARTEVVDPTDGIDNQKVQKAMPDPFSPDEVEVILRALEEQAGSTWADYFEFSFFAGFRASEQI ALLWEDVDHRSRTALVWRTRVLTKDKDRTKTNVERQVELNDRAYNAIRRQRARTEAAGREVFWNPNTGKPFIDEQSQRRV WRAALRKAGVRYRAPKECRDTSVTLALMAGANPMWVALQHGHSVQVMMRDYAKWIPSADRGANRAAVNAAISGPAQDQKK AI
Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]
COG id: COG0582
COG function: function code L; Integrase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family [H]
Homologues:
Organism=Escherichia coli, GI1787607, Length=418, Percent_Identity=26.555023923445, Blast_Score=119, Evalue=4e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011010 - InterPro: IPR022000 - InterPro: IPR013762 - InterPro: IPR002104 - InterPro: IPR023109 [H]
Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]
EC number: NA
Molecular weight: Translated: 45935; Mature: 45804
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRKASSGGVRPRGNRIEVRFTWEGKQVSPTLDLRPTAANLKHAARLRATIVEEINQGKF CCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC RFAEHFPDYKNLTAVQPATDEESRLFRDWAKVWGRLSARGLEHSSHAVYLRHLAAYWLPV HHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH FGHLPPERITHVMVLERLADLSAPRLDEKTGKTRRALARKTQNNILIPLRGVFELICKAR HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHH TEVVDPTDGIDNQKVQKAMPDPFSPDEVEVILRALEEQAGSTWADYFEFSFFAGFRASEQ HHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCE IALLWEDVDHRSRTALVWRTRVLTKDKDRTKTNVERQVELNDRAYNAIRRQRARTEAAGR EEEEEECCCCCCCEEHEEEHHHHCCCCCHHHCCCHHEEECCHHHHHHHHHHHHHHHHCCC EVFWNPNTGKPFIDEQSQRRVWRAALRKAGVRYRAPKECRDTSVTLALMAGANPMWVALQ EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEEECCCCEEEEEE HGHSVQVMMRDYAKWIPSADRGANRAAVNAAISGPAQDQKKAI CCCCHHHHHHHHHHHCCCCCCCCCHHHEEHHCCCCCCHHHCCC >Mature Secondary Structure GRKASSGGVRPRGNRIEVRFTWEGKQVSPTLDLRPTAANLKHAARLRATIVEEINQGKF CCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC RFAEHFPDYKNLTAVQPATDEESRLFRDWAKVWGRLSARGLEHSSHAVYLRHLAAYWLPV HHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH FGHLPPERITHVMVLERLADLSAPRLDEKTGKTRRALARKTQNNILIPLRGVFELICKAR HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHH TEVVDPTDGIDNQKVQKAMPDPFSPDEVEVILRALEEQAGSTWADYFEFSFFAGFRASEQ HHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCE IALLWEDVDHRSRTALVWRTRVLTKDKDRTKTNVERQVELNDRAYNAIRRQRARTEAAGR EEEEEECCCCCCCEEHEEEHHHHCCCCCHHHCCCHHEEECCHHHHHHHHHHHHHHHHCCC EVFWNPNTGKPFIDEQSQRRVWRAALRKAGVRYRAPKECRDTSVTLALMAGANPMWVALQ EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEEECCCCEEEEEE HGHSVQVMMRDYAKWIPSADRGANRAAVNAAISGPAQDQKKAI CCCCHHHHHHHHHHHCCCCCCCCCHHHEEHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]