Click here to switch to the map view.

The map label for this gene is dapA [H]

Identifier: 120610921

GI number: 120610921

Start: 2470395

End: 2471333

Strand: Reverse

Name: dapA [H]

Synonym: Aave_2247

Alternate gene names: 120610921

Gene position: 2471333-2470395 (Counterclockwise)

Preceding gene: 120610922

Following gene: 120610920

Centisome position: 46.17

GC content: 69.44

Gene sequence:

>939_bases
ATGCCTGCAAAACACTCTGCCCTGAATCCACGCTACCGCGGCATCTTCCCGGTCGTGCCGACCACGTTCCACGAGGATGG
CAGCCTCGATCTGGAAAGCCAGAAGCGCTGCCTGGATTTCATGATCGACGCCGGCGTCGATGGCCTGTGCATCCTGGCCA
ACTTCTCCGAGCAGTTCTCGCTGTCGGACGCCGAGCGCGAGATCCTCACGCGCACGTCGCTGGAGCACGTCGCGGGCCGG
GTGCCGGTGATCGTCACCACCACGCACTACGGCACCCGCGTGTGCGCCGAGCGCAGCCGCGCCGCGCAGGACATGGGCGC
GGCCATGGTGATGGTGATGCCGCCCTACCACGGCGCCACCTTCCGCGTGCCCGAGGCGCAGATCCACGAGTTCTATGCCC
GCGTATCCGACGCCATCGACATTCCCATCATGGTGCAGGACGCACCGGCCAGCGGCACCGTGCTGTCCGCCCCCTTCCTC
GCCCGCATGGCGCAGGAGATCGAGCACCTGGCCTACTTCAAGATCGAGACCCCCGGTGCCGCCAGCAAGCTGCGCGAGCT
GATCCGCCTGGGCGGCGATGCCATCGAAGGGCCGTGGGACGGCGAGGAAGCCATCACCCTGCTGGCCGACCTGGACGCGG
GCGCCACGGGCGCGATGACGGGCGGTGCCTTCCCGGATGGCATCCGCCCCATCATCGAGGCCCACCGCCAGGGCGACAGG
GACCAGGCCTTCGCGCTCTACCAGCGCTGGCTGCCGCTCATCAACCACGAGAACCGCCAGGGCGGCATCCTCACCGCCAA
GGCGCTGATGAAGGAAGGCGGCGTGATCGCCTGCGAGGCCGGCCGCCACCCGTTCCCGCCCATGCACTCCGAGGTGCGCC
GCGGCCTGATCGACATCGCGCGCCGGCTCGACCCGCTGGTGCTGCGCTGGGCCCGCTGA

Upstream 100 bases:

>100_bases
CCTTGCTCGGCTGCCCTGGCTTCGGGCCGCGCCAGTAGCGTCGGCTGCGCTCACAGCAAGGCGCACAGCAGACCTAAGCA
ACCCATGAATTTGTGAACCT

Downstream 100 bases:

>100_bases
GCCGGCTGCCGCCATGAACGACCACGCCGCCGACCTCCAGGCCACCCGCCTCGTCGCCCTCGACTGGGGCACCAGTTCGC
TGCGCGCCTACCGCCTGGGC

Product: 2-dehydro-3-deoxy-L-arabinonate dehydratase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MPAKHSALNPRYRGIFPVVPTTFHEDGSLDLESQKRCLDFMIDAGVDGLCILANFSEQFSLSDAEREILTRTSLEHVAGR
VPVIVTTTHYGTRVCAERSRAAQDMGAAMVMVMPPYHGATFRVPEAQIHEFYARVSDAIDIPIMVQDAPASGTVLSAPFL
ARMAQEIEHLAYFKIETPGAASKLRELIRLGGDAIEGPWDGEEAITLLADLDAGATGAMTGGAFPDGIRPIIEAHRQGDR
DQAFALYQRWLPLINHENRQGGILTAKALMKEGGVIACEAGRHPFPPMHSEVRRGLIDIARRLDPLVLRWAR

Sequences:

>Translated_312_residues
MPAKHSALNPRYRGIFPVVPTTFHEDGSLDLESQKRCLDFMIDAGVDGLCILANFSEQFSLSDAEREILTRTSLEHVAGR
VPVIVTTTHYGTRVCAERSRAAQDMGAAMVMVMPPYHGATFRVPEAQIHEFYARVSDAIDIPIMVQDAPASGTVLSAPFL
ARMAQEIEHLAYFKIETPGAASKLRELIRLGGDAIEGPWDGEEAITLLADLDAGATGAMTGGAFPDGIRPIIEAHRQGDR
DQAFALYQRWLPLINHENRQGGILTAKALMKEGGVIACEAGRHPFPPMHSEVRRGLIDIARRLDPLVLRWAR
>Mature_311_residues
PAKHSALNPRYRGIFPVVPTTFHEDGSLDLESQKRCLDFMIDAGVDGLCILANFSEQFSLSDAEREILTRTSLEHVAGRV
PVIVTTTHYGTRVCAERSRAAQDMGAAMVMVMPPYHGATFRVPEAQIHEFYARVSDAIDIPIMVQDAPASGTVLSAPFLA
RMAQEIEHLAYFKIETPGAASKLRELIRLGGDAIEGPWDGEEAITLLADLDAGATGAMTGGAFPDGIRPIIEAHRQGDRD
QAFALYQRWLPLINHENRQGGILTAKALMKEGGVIACEAGRHPFPPMHSEVRRGLIDIARRLDPLVLRWAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1786463, Length=246, Percent_Identity=30.8943089430894, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082415, Length=251, Percent_Identity=27.4900398406374, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 34229; Mature: 34097

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKHSALNPRYRGIFPVVPTTFHEDGSLDLESQKRCLDFMIDAGVDGLCILANFSEQFS
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
LSDAEREILTRTSLEHVAGRVPVIVTTTHYGTRVCAERSRAAQDMGAAMVMVMPPYHGAT
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCE
FRVPEAQIHEFYARVSDAIDIPIMVQDAPASGTVLSAPFLARMAQEIEHLAYFKIETPGA
EECCHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECCHHHHHHHHHHHHHEEEEEECCCH
ASKLRELIRLGGDAIEGPWDGEEAITLLADLDAGATGAMTGGAFPDGIRPIIEAHRQGDR
HHHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCH
DQAFALYQRWLPLINHENRQGGILTAKALMKEGGVIACEAGRHPFPPMHSEVRRGLIDIA
HHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH
RRLDPLVLRWAR
HHCCHHHHEECC
>Mature Secondary Structure 
PAKHSALNPRYRGIFPVVPTTFHEDGSLDLESQKRCLDFMIDAGVDGLCILANFSEQFS
CCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
LSDAEREILTRTSLEHVAGRVPVIVTTTHYGTRVCAERSRAAQDMGAAMVMVMPPYHGAT
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCE
FRVPEAQIHEFYARVSDAIDIPIMVQDAPASGTVLSAPFLARMAQEIEHLAYFKIETPGA
EECCHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECCHHHHHHHHHHHHHEEEEEECCCH
ASKLRELIRLGGDAIEGPWDGEEAITLLADLDAGATGAMTGGAFPDGIRPIIEAHRQGDR
HHHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCH
DQAFALYQRWLPLINHENRQGGILTAKALMKEGGVIACEAGRHPFPPMHSEVRRGLIDIA
HHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH
RRLDPLVLRWAR
HHCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA