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The map label for this gene is sdhC [H]

Identifier: 120610878

GI number: 120610878

Start: 2424149

End: 2424583

Strand: Reverse

Name: sdhC [H]

Synonym: Aave_2204

Alternate gene names: 120610878

Gene position: 2424583-2424149 (Counterclockwise)

Preceding gene: 120610879

Following gene: 120610877

Centisome position: 45.3

GC content: 63.68

Gene sequence:

>435_bases
ATGACCGAGATCGCCAAAAAGCGGCCTGAATTCCGCAACATCAACGCCCTCACGGACCTGCCCACGTACCGCCTGCCGGC
CGCGGGATGGGTGTCGATCCTGCACCGCATCAGCGGCGTGATCATGCTGCTGCTGCTGCCGTTCGTGCTGTGGATGTTCG
ACACCTCGGTGTCTTCCGAGATCTCGTTCGGCAAGTTCACCTCGGCGTTCACCGCGGGCCTGGGCTTCGTGCCCGGCTGG
TTCATCAAGCTCGTGGTGCTGGCGCTGATCTGGGCCTACCTGCACCACTTCACCGCCGGCCTGCGCCACCTCTGGATGGA
TGTGAGCCACGACGCCGTGAACAAGGATTTCGGATCCATGTCGGCCAAGGCCACGCTGGTGATCAGCCTCGCCCTCACCG
TGGTCCTCGGCGCCAAGCTCTTCGGGCTGTACTGA

Upstream 100 bases:

>100_bases
TCGTAGTACCCACAAACTCCGCCTTGTTGCATTGCAATAGAATTTTGGGCGTTTCGCCCGCGCGAAATTACAAAGCAGTT
ACATCCACGAAAGCACCGCC

Downstream 100 bases:

>100_bases
CCTGAATCGCCGGCCGGCGTCCCCGCCCTCTTCCATTCCAACGATTCCCCAAGGATTTCCCCATGTCCGTGAACTATGGT
TCCAAGCGCACCGTCGTCGG

Product: succinate dehydrogenase subunit C

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSEISFGKFTSAFTAGLGFVPGW
FIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSMSAKATLVISLALTVVLGAKLFGLY

Sequences:

>Translated_144_residues
MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSEISFGKFTSAFTAGLGFVPGW
FIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSMSAKATLVISLALTVVLGAKLFGLY
>Mature_143_residues
TEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSEISFGKFTSAFTAGLGFVPGWF
IKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSMSAKATLVISLALTVVLGAKLFGLY

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=135, Percent_Identity=31.1111111111111, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15999; Mature: 15868

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSE
CCCHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ISFGKFTSAFTAGLGFVPGWFIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSM
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
SAKATLVISLALTVVLGAKLFGLY
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSE
CCHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ISFGKFTSAFTAGLGFVPGWFIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSM
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
SAKATLVISLALTVVLGAKLFGLY
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]