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The map label for this gene is yddQ [C]

Identifier: 120610863

GI number: 120610863

Start: 2407861

End: 2408760

Strand: Direct

Name: yddQ [C]

Synonym: Aave_2189

Alternate gene names: 120610863

Gene position: 2407861-2408760 (Clockwise)

Preceding gene: 120610862

Following gene: 120610864

Centisome position: 44.98

GC content: 72.22

Gene sequence:

>900_bases
ATGGACACCGTATCTCCTTCGCCCGGCGCGCCTGCGGCGCCCGCGGCCCGGCACGGGCGCCTGCCCCGCGCGCTGCGCTG
GCTGGCCCGCCTCGGTCCGCTGGGCCTTCTGGCACTGACCGTGCTGCTGTTCTGGATGCTGGCCGCGCTGGTCGGTCCCC
TGCTGCTGGGCGGCCCGCCCTCGGCCTCGGGCGGGGGCACGGACGTGTTCGCGCCCATCAGCGCCGCGCACTGGCTGGGA
ACGGACTATCTGGGCCGCGACATGCTGGCCCGCGTCGTGCATGGCGCCCGCTACACCGTGGGCGTGGCGCTGCTGGCGAC
GCTGATCGCCAGCAGCACCGGCACCGTGCTCGCGCTGCTGGCGGCGGCCGTGGGGGGGCGGCTCGACTCGGTGTTGAGCC
GGGTGCTCGACACGCTGACGGCCATCCCGAGCAAGATGTTCGCGCTCATCATGGTCGCCGGCTTCGGTTCGTCGGTGGCG
ATGCTGGTGGCGACCGCCGCCATCATCTACGTGCCCGGTGCCTACCGCATCGCGCGCTCGCTGGCGGTGAACATCAATGC
GCTCGACTACGTCACCGTGGCGCGCACCCGCGGCGAAGGCACGCTCTACGTGATGCTGCGCGAGATCCTGCCCAACATCC
TGGGCCCCATGCTCTCGGACCTGGGCCTGCGCTTCGTCTATGTGGTGCTGCTGCTCGCGAGCCTCAGCTTCCTGGGCCTG
GGAATACAGCCGCCCGAGGCGGACTGGGGGTCGCTGGTGCGCGAGAACATCGGCGCGCTGCCCGAGGGCGGCGCCGCGGT
GATCTCCCCGGCCATCGCCATCGCGAGCCTGACCATCGCCGTCAATCTCGTCATCGACAACCTGCCGGGCCGCGCCGCCC
GCGAACGAGGAGCCCGCTGA

Upstream 100 bases:

>100_bases
ACCTGATCCTCGTCACGCTGGCGGACCTGTGCGGCATCGTCGCCAATCCGCGCCTGCGTCACCGCTGACATTCCGCATTC
CGACCAAGGAGCTCCCCCCG

Downstream 100 bases:

>100_bases
TGGGAGCATCCGTTACCGTGCAGGACCTGCACATCACCGCGGGCAGCCAGACGCTGGTGGACCGCGTGAGCTTCTCGATC
GAGCCGGGCGAGGTGCTCGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDTVSPSPGAPAAPAARHGRLPRALRWLARLGPLGLLALTVLLFWMLAALVGPLLLGGPPSASGGGTDVFAPISAAHWLG
TDYLGRDMLARVVHGARYTVGVALLATLIASSTGTVLALLAAAVGGRLDSVLSRVLDTLTAIPSKMFALIMVAGFGSSVA
MLVATAAIIYVPGAYRIARSLAVNINALDYVTVARTRGEGTLYVMLREILPNILGPMLSDLGLRFVYVVLLLASLSFLGL
GIQPPEADWGSLVRENIGALPEGGAAVISPAIAIASLTIAVNLVIDNLPGRAARERGAR

Sequences:

>Translated_299_residues
MDTVSPSPGAPAAPAARHGRLPRALRWLARLGPLGLLALTVLLFWMLAALVGPLLLGGPPSASGGGTDVFAPISAAHWLG
TDYLGRDMLARVVHGARYTVGVALLATLIASSTGTVLALLAAAVGGRLDSVLSRVLDTLTAIPSKMFALIMVAGFGSSVA
MLVATAAIIYVPGAYRIARSLAVNINALDYVTVARTRGEGTLYVMLREILPNILGPMLSDLGLRFVYVVLLLASLSFLGL
GIQPPEADWGSLVRENIGALPEGGAAVISPAIAIASLTIAVNLVIDNLPGRAARERGAR
>Mature_299_residues
MDTVSPSPGAPAAPAARHGRLPRALRWLARLGPLGLLALTVLLFWMLAALVGPLLLGGPPSASGGGTDVFAPISAAHWLG
TDYLGRDMLARVVHGARYTVGVALLATLIASSTGTVLALLAAAVGGRLDSVLSRVLDTLTAIPSKMFALIMVAGFGSSVA
MLVATAAIIYVPGAYRIARSLAVNINALDYVTVARTRGEGTLYVMLREILPNILGPMLSDLGLRFVYVVLLLASLSFLGL
GIQPPEADWGSLVRENIGALPEGGAAVISPAIAIASLTIAVNLVIDNLPGRAARERGAR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=264, Percent_Identity=29.9242424242424, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787054, Length=215, Percent_Identity=33.953488372093, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789964, Length=231, Percent_Identity=35.4978354978355, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787549, Length=230, Percent_Identity=34.3478260869565, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789889, Length=219, Percent_Identity=28.7671232876712, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787498, Length=217, Percent_Identity=29.0322580645161, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=26.5486725663717, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30837; Mature: 30837

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTVSPSPGAPAAPAARHGRLPRALRWLARLGPLGLLALTVLLFWMLAALVGPLLLGGPP
CCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SASGGGTDVFAPISAAHWLGTDYLGRDMLARVVHGARYTVGVALLATLIASSTGTVLALL
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH
AAAVGGRLDSVLSRVLDTLTAIPSKMFALIMVAGFGSSVAMLVATAAIIYVPGAYRIARS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
LAVNINALDYVTVARTRGEGTLYVMLREILPNILGPMLSDLGLRFVYVVLLLASLSFLGL
HHHCCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GIQPPEADWGSLVRENIGALPEGGAAVISPAIAIASLTIAVNLVIDNLPGRAARERGAR
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
>Mature Secondary Structure
MDTVSPSPGAPAAPAARHGRLPRALRWLARLGPLGLLALTVLLFWMLAALVGPLLLGGPP
CCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SASGGGTDVFAPISAAHWLGTDYLGRDMLARVVHGARYTVGVALLATLIASSTGTVLALL
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH
AAAVGGRLDSVLSRVLDTLTAIPSKMFALIMVAGFGSSVAMLVATAAIIYVPGAYRIARS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
LAVNINALDYVTVARTRGEGTLYVMLREILPNILGPMLSDLGLRFVYVVLLLASLSFLGL
HHHCCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GIQPPEADWGSLVRENIGALPEGGAAVISPAIAIASLTIAVNLVIDNLPGRAARERGAR
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA