Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120610155
Identifier: 120610155
GI number: 120610155
Start: 1621473
End: 1623806
Strand: Direct
Name: 120610155
Synonym: Aave_1468
Alternate gene names: NA
Gene position: 1621473-1623806 (Clockwise)
Preceding gene: 120610154
Following gene: 120610156
Centisome position: 30.29
GC content: 71.29
Gene sequence:
>2334_bases ATGGACAAAGTCGAACTCAGGGTCGTCCGCCATGCGGACGAAGCGGTGGACCGCTTATGGACGGCGGTATTCGGCGTGGC GGGCGGAACGATCGGCCGCGGAGGGCAGAACAAGCTCGTGCTGTCCGACAGCGATGCGGGTGTCGCCCGCGTGCATGCGA TGGTGCGCATCGAATCCGAGGCCGCCTTCATCGCCAATCTCTGCGAGCGCCGGTCGATTTTCGTGGCGGGTGCCGAAGTG CGCTCGGGCGAAGAGGTGCGCCTGGCAGTGGGGGACGAGGTCCGCATCGGGCCCTACGTCCTGCATTCCGTCGTGCCGGG CTCGCCCTTCGTTCCCGTGGCGGCTGTTCCTGCTCCAGTTCCGGCTCCCGCCCCCGAACCCGTATCTGCGCCCGCTCCGG TAGCGAATCCGTCGTCCCCGGCCTCTGCCGCCGGCGTGCCGGTTCCCGTTTCCGTTCCCGTAGCCATTCCGGTGGCGAAC GTGCCGCAGGGCGAGGGGCTGACTGTCGTGCCGTCGCCGCCTGTGGCGATGCCTGCGGCCGGAACGGGAGAAGGCCTGGC GGCGGCCGCGGCCTCTGCGGAGGAAGACGACAACCCCTTCGCGATGCTTGGTCGCGTGGAAGGGCCGGCCATCGCCGCCT CGGCCCCGTCCCGGGCCCCGGCGCCGGCCGCCTTGCCCACGGCCTCGACTGCGCCCATACCCGCGTTCGGCCCCGTGCCC GCCGACGCACCTGTGCCGCCATCCCGGTCCGCGTCCATGCCTGCCCCGGACGGGGTCCATGGTTTCGCCGCGTCGCCCGC ATCGGCGATTCCGGTGCCTTCCGACCAGGGTCGGCAGGACAATGCCTGGTCCCCGGCGGTGCCGCAGGACAGGCCCGCCG CGGCACCGGCCCCCCGGGCCCTCGTCATTCCGGAGGACTTCGATCTTTTCGCGGTGGACCCCCGCAAGGGCGAGGAGAAA AAGGATGCCTGGGGGAGCGGTTTGCAGGCTAAGAGCCTGAGCGAGATCGCCAACATGCGGCACGACGAACTGCTGCAGTC GCTGCCGGCCAGCGGCGCGAAATTCGCGCACGACATGGACAACCCGGCCCATGCCGGGCTGCCCAAGGCGCTGGACCCGC GCGACGAACTCGACCCGCTGCGGCTCTTCACGGGCGGCTCGGATGCGGCCTCGGCACTGGTGCCCGAACGTTCGGCGATG GTGCTCGGTTCGGGGTCCGACCTGTCTCAGTCGTTCAGCCTTCCGAGGGGCGTGCAGGCGCCGGTGGGGCCGGGGCTCCC CGGCGCGGCAGAGGTGCCGGGAAGTTCCCCGCCGGTCGTCCAGGGCGCCGGCACGAACCCGGGCATGGCGTCCGCCGCGC CACCGGCCCCTCCGCTGGAGGGCCTGCAGCGTGTGGAAGGACTCGACCTTGGTGCCTTCGGCTCCGGTTCCGCTTCGGCC GATCCACTGGGCTGGCCGCCCGTGGAGAGCGGGCCCGCCCCCGCTGCTGTCGACGTGCTGCCGCAAGCCACGCTTTCCGG GCTGGCTGCCGGCGATGCGAAGGCCGTGCCCATCGAGGAGGTGGCGCTGGCGCATGTTCCTGCCGCGGCCGGCACGCCTG CTCCAGTCCCGGCGCCGGCCCCCGCGCCCGCTCCTGCGCCCACCGCCTCCCACGGCCCGGCTGGGGAAGAGGGCACCCCG AAGTCGCCCCTGGCTCCGGTGCTGCCGGAACTGGAAGCCGCTTCGCCAGCGGAGTTGCAGTCGCTGATCGCCGCCTTCCT GGAAGGCGCGGGGGTGCTGCAGAAGAAGGTCGAGCCGCAGAAGCTCAGTCCCGAGTTCATGCGATCGTTCGGGGAAGCCT TCCGCGTGGCCGTGCAGGGCACCATCGACCTGCTGGCCGCCCGCTCCGAGATCAAGCGCGAATTCCGCGCAGGCGTGACG GTGATTTCCTCCGGCGCGAACAATCCGCTGAAGTTCCTGCCGACGCCCGAGGGCGTGGTCATGCAGATGATCGGGCAGAA TTTCCCGGGGTTCATGAAGCCGATCCCCGCCATGCAGGAGGCCTACGACGACCTGCGGGTCCACCAGGTGGCCCTGATGG CCGGCCTGCGCGCGGCCTACGCCGAGGCGCTGGAGCGTTTCGATCCCGCGGCCCTGGAGCAGCGCACCGACGTGACCGGT GGGGTGTTCGGCAAGCTGTCGGCCACGAGCCGCAAGGCAGCGCTGTGGGACGAGTACAAGCGCAATTTCGCCGAGATCCG GCGCGGCGCCGAGGACGACCTGGCGGCCTTCTCCGGCCAGGCCTTCCTGGAGGCCTATGAAAACGCCGAGGCGGCGGCGA AGGCCAGGACGTGA
Upstream 100 bases:
>100_bases GGGCAAGGAATTCAACGCCGCGCGTGCGGTGGTCACCATGCGCGCGAAGCGCGCCCTCCCGGCCAAGAAGGCGCCCTGAC CCCGGCGGGTCGTAGCGGAC
Downstream 100 bases:
>100_bases TCTTCCATATCGCAGGCGAGGAGTTCCGGTTCCGGGTGATGGCGGCTTCGCTGTCGGAAAAGGGCGGCCGGGAGGTGAAC GAGGATTTCCTGGGCATGGT
Product: FHA domain-containing protein
Products: NA
Alternate protein names: FHA Domain Containing Protein; Type VI Secretion System FHA Domain Protein; Type VI Secretion System Core Protein; Forkhead-Associated Protein; FHA Domain Protein; Forkhead-Associated Protein Type VI Secretion System; Protein ImpI/VasC; FHA-Family Protein; Regulatory Protein; Type VI Secretion System FHA Domain-Containing Protein; Secreted Protein
Number of amino acids: Translated: 777; Mature: 777
Protein sequence:
>777_residues MDKVELRVVRHADEAVDRLWTAVFGVAGGTIGRGGQNKLVLSDSDAGVARVHAMVRIESEAAFIANLCERRSIFVAGAEV RSGEEVRLAVGDEVRIGPYVLHSVVPGSPFVPVAAVPAPVPAPAPEPVSAPAPVANPSSPASAAGVPVPVSVPVAIPVAN VPQGEGLTVVPSPPVAMPAAGTGEGLAAAAASAEEDDNPFAMLGRVEGPAIAASAPSRAPAPAALPTASTAPIPAFGPVP ADAPVPPSRSASMPAPDGVHGFAASPASAIPVPSDQGRQDNAWSPAVPQDRPAAAPAPRALVIPEDFDLFAVDPRKGEEK KDAWGSGLQAKSLSEIANMRHDELLQSLPASGAKFAHDMDNPAHAGLPKALDPRDELDPLRLFTGGSDAASALVPERSAM VLGSGSDLSQSFSLPRGVQAPVGPGLPGAAEVPGSSPPVVQGAGTNPGMASAAPPAPPLEGLQRVEGLDLGAFGSGSASA DPLGWPPVESGPAPAAVDVLPQATLSGLAAGDAKAVPIEEVALAHVPAAAGTPAPVPAPAPAPAPAPTASHGPAGEEGTP KSPLAPVLPELEAASPAELQSLIAAFLEGAGVLQKKVEPQKLSPEFMRSFGEAFRVAVQGTIDLLAARSEIKREFRAGVT VISSGANNPLKFLPTPEGVVMQMIGQNFPGFMKPIPAMQEAYDDLRVHQVALMAGLRAAYAEALERFDPAALEQRTDVTG GVFGKLSATSRKAALWDEYKRNFAEIRRGAEDDLAAFSGQAFLEAYENAEAAAKART
Sequences:
>Translated_777_residues MDKVELRVVRHADEAVDRLWTAVFGVAGGTIGRGGQNKLVLSDSDAGVARVHAMVRIESEAAFIANLCERRSIFVAGAEV RSGEEVRLAVGDEVRIGPYVLHSVVPGSPFVPVAAVPAPVPAPAPEPVSAPAPVANPSSPASAAGVPVPVSVPVAIPVAN VPQGEGLTVVPSPPVAMPAAGTGEGLAAAAASAEEDDNPFAMLGRVEGPAIAASAPSRAPAPAALPTASTAPIPAFGPVP ADAPVPPSRSASMPAPDGVHGFAASPASAIPVPSDQGRQDNAWSPAVPQDRPAAAPAPRALVIPEDFDLFAVDPRKGEEK KDAWGSGLQAKSLSEIANMRHDELLQSLPASGAKFAHDMDNPAHAGLPKALDPRDELDPLRLFTGGSDAASALVPERSAM VLGSGSDLSQSFSLPRGVQAPVGPGLPGAAEVPGSSPPVVQGAGTNPGMASAAPPAPPLEGLQRVEGLDLGAFGSGSASA DPLGWPPVESGPAPAAVDVLPQATLSGLAAGDAKAVPIEEVALAHVPAAAGTPAPVPAPAPAPAPAPTASHGPAGEEGTP KSPLAPVLPELEAASPAELQSLIAAFLEGAGVLQKKVEPQKLSPEFMRSFGEAFRVAVQGTIDLLAARSEIKREFRAGVT VISSGANNPLKFLPTPEGVVMQMIGQNFPGFMKPIPAMQEAYDDLRVHQVALMAGLRAAYAEALERFDPAALEQRTDVTG GVFGKLSATSRKAALWDEYKRNFAEIRRGAEDDLAAFSGQAFLEAYENAEAAAKART >Mature_777_residues MDKVELRVVRHADEAVDRLWTAVFGVAGGTIGRGGQNKLVLSDSDAGVARVHAMVRIESEAAFIANLCERRSIFVAGAEV RSGEEVRLAVGDEVRIGPYVLHSVVPGSPFVPVAAVPAPVPAPAPEPVSAPAPVANPSSPASAAGVPVPVSVPVAIPVAN VPQGEGLTVVPSPPVAMPAAGTGEGLAAAAASAEEDDNPFAMLGRVEGPAIAASAPSRAPAPAALPTASTAPIPAFGPVP ADAPVPPSRSASMPAPDGVHGFAASPASAIPVPSDQGRQDNAWSPAVPQDRPAAAPAPRALVIPEDFDLFAVDPRKGEEK KDAWGSGLQAKSLSEIANMRHDELLQSLPASGAKFAHDMDNPAHAGLPKALDPRDELDPLRLFTGGSDAASALVPERSAM VLGSGSDLSQSFSLPRGVQAPVGPGLPGAAEVPGSSPPVVQGAGTNPGMASAAPPAPPLEGLQRVEGLDLGAFGSGSASA DPLGWPPVESGPAPAAVDVLPQATLSGLAAGDAKAVPIEEVALAHVPAAAGTPAPVPAPAPAPAPAPTASHGPAGEEGTP KSPLAPVLPELEAASPAELQSLIAAFLEGAGVLQKKVEPQKLSPEFMRSFGEAFRVAVQGTIDLLAARSEIKREFRAGVT VISSGANNPLKFLPTPEGVVMQMIGQNFPGFMKPIPAMQEAYDDLRVHQVALMAGLRAAYAEALERFDPAALEQRTDVTG GVFGKLSATSRKAALWDEYKRNFAEIRRGAEDDLAAFSGQAFLEAYENAEAAAKART
Specific function: Unknown
COG id: COG3456
COG function: function code T; Uncharacterized conserved protein, contains FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78864; Mature: 78864
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKVELRVVRHADEAVDRLWTAVFGVAGGTIGRGGQNKLVLSDSDAGVARVHAMVRIESE CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHEEEEEEECCH AAFIANLCERRSIFVAGAEVRSGEEVRLAVGDEVRIGPYVLHSVVPGSPFVPVAAVPAPV HHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCEEECHHHHHHHCCCCCCCCEEECCCCC PAPAPEPVSAPAPVANPSSPASAAGVPVPVSVPVAIPVANVPQGEGLTVVPSPPVAMPAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCCCCEEEECCCCCCCCCC GTGEGLAAAAASAEEDDNPFAMLGRVEGPAIAASAPSRAPAPAALPTASTAPIPAFGPVP CCCCCHHHHHCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC ADAPVPPSRSASMPAPDGVHGFAASPASAIPVPSDQGRQDNAWSPAVPQDRPAAAPAPRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE LVIPEDFDLFAVDPRKGEEKKDAWGSGLQAKSLSEIANMRHDELLQSLPASGAKFAHDMD EECCCCCCEEEECCCCCCCHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCC NPAHAGLPKALDPRDELDPLRLFTGGSDAASALVPERSAMVLGSGSDLSQSFSLPRGVQA CCHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCC PVGPGLPGAAEVPGSSPPVVQGAGTNPGMASAAPPAPPLEGLQRVEGLDLGAFGSGSASA CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC DPLGWPPVESGPAPAAVDVLPQATLSGLAAGDAKAVPIEEVALAHVPAAAGTPAPVPAPA CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC PAPAPAPTASHGPAGEEGTPKSPLAPVLPELEAASPAELQSLIAAFLEGAGVLQKKVEPQ CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCC KLSPEFMRSFGEAFRVAVQGTIDLLAARSEIKREFRAGVTVISSGANNPLKFLPTPEGVV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCHHHH MQMIGQNFPGFMKPIPAMQEAYDDLRVHQVALMAGLRAAYAEALERFDPAALEQRTDVTG HHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC GVFGKLSATSRKAALWDEYKRNFAEIRRGAEDDLAAFSGQAFLEAYENAEAAAKART CCEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKVELRVVRHADEAVDRLWTAVFGVAGGTIGRGGQNKLVLSDSDAGVARVHAMVRIESE CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHEEEEEEECCH AAFIANLCERRSIFVAGAEVRSGEEVRLAVGDEVRIGPYVLHSVVPGSPFVPVAAVPAPV HHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCEEECHHHHHHHCCCCCCCCEEECCCCC PAPAPEPVSAPAPVANPSSPASAAGVPVPVSVPVAIPVANVPQGEGLTVVPSPPVAMPAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCCCCEEEECCCCCCCCCC GTGEGLAAAAASAEEDDNPFAMLGRVEGPAIAASAPSRAPAPAALPTASTAPIPAFGPVP CCCCCHHHHHCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC ADAPVPPSRSASMPAPDGVHGFAASPASAIPVPSDQGRQDNAWSPAVPQDRPAAAPAPRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE LVIPEDFDLFAVDPRKGEEKKDAWGSGLQAKSLSEIANMRHDELLQSLPASGAKFAHDMD EECCCCCCEEEECCCCCCCHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCC NPAHAGLPKALDPRDELDPLRLFTGGSDAASALVPERSAMVLGSGSDLSQSFSLPRGVQA CCHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCC PVGPGLPGAAEVPGSSPPVVQGAGTNPGMASAAPPAPPLEGLQRVEGLDLGAFGSGSASA CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC DPLGWPPVESGPAPAAVDVLPQATLSGLAAGDAKAVPIEEVALAHVPAAAGTPAPVPAPA CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC PAPAPAPTASHGPAGEEGTPKSPLAPVLPELEAASPAELQSLIAAFLEGAGVLQKKVEPQ CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCC KLSPEFMRSFGEAFRVAVQGTIDLLAARSEIKREFRAGVTVISSGANNPLKFLPTPEGVV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCHHHH MQMIGQNFPGFMKPIPAMQEAYDDLRVHQVALMAGLRAAYAEALERFDPAALEQRTDVTG HHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC GVFGKLSATSRKAALWDEYKRNFAEIRRGAEDDLAAFSGQAFLEAYENAEAAAKART CCEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA