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The map label for this gene is 120610150

Identifier: 120610150

GI number: 120610150

Start: 1615495

End: 1616532

Strand: Direct

Name: 120610150

Synonym: Aave_1463

Alternate gene names: NA

Gene position: 1615495-1616532 (Clockwise)

Preceding gene: 120610141

Following gene: 120610153

Centisome position: 30.18

GC content: 71.0

Gene sequence:

>1038_bases
GTGAAAGCCTCGGCAGCGTCAAGCGACAATCGCCGGGTGACCACGCCACATTCCACGCGCCGCGACGCAGACATTCCCGA
GGCGGCAGCGCCTGAACCGCCTGCAGCGCCCAACCTGCCCGCCACCCCGCCCGCCACGCGGGTACCGGAAGGCTTCCAAC
CGGCGGCGTCGTCGCGCCCCCCGGAAGGGGATGCGGAATGGCGCGCGCAGCCCGTCACGCATTACGAGAATTTCCCGGTG
GCGTCCTGGCTGTGCCCACCGGCACTGCGCGAGCCGATCGCCGCGATCTACGGCTTTGCCCGCACGGCCGACGACATCGC
GGACGAGGGCGATGACACGCCTGCAGAGCGGCTGGAGGTACTGGCGGAATACACCACGGAACTGCACCGCATCGCCGCGG
GCCACCCACCCGGAGCGCGGTGGGCGGCGGTGTTCGGCCCGCTCCAGAGGGCGATCCGTGCACACGCGCTTCCCGTCCCG
CTGCTGGCGGACCTGTTGAGCGCTTTCACCCAGGACATCGTGCGGACGTCGGCCGGCCTCACCTATGCGCATCGGGATGA
ACTGCTCGACTACTGCCGGCGGTCCGCCAACCCGGTGGGGCGGCTGTTGCTGCACCTCTACGGCATCGGCGATGCCCGGG
CGCTGGCCCGCAGCGATGCGATCTGCACCGCGCTGCAGCTCATCAATTTCTGGCAGGACTTCAGCGTGGACCTGCCCCGC
GGACGGCATTACCTCACCGATGCCGATCTGGCGCGCTTCGGCATCGACCGCGCGCTGCTGCAGCGTCAGCCGATCGATCC
GCGGGCGCGTGCCCTGGTGGCCGACAACGCGGCGTGGGCACGGGCGCTAATGGAGGAGGGCGCCCCGCTCGTGCACCAAC
TGCCCGGCCGCATCGGTTGGGAGCTGCGCCTCGTGGTGCAGGGCGGGCTGCGCATTCTCGACAAGGTCGAAGCCCTGCGC
GGCGACAGCCTCGTGCGCCGGCCGGTGCTGGGGGGCTTCGACTGGCTGCGGATGGTGGCCCGGGCCGTGGCGATGTGA

Upstream 100 bases:

>100_bases
GCTGGAGGGGGCGGGTGCGCCTGGAAGTCCGGGGCTGCGCGGAAAGCGGCATGGTGGTTCCCGAGGAGGGCGGTTAATGA
CTGACTGGTTAGTAATCTAG

Downstream 100 bases:

>100_bases
CCCGGCAGGCGCGGCACCGTCGGGTGGAGCCTGCGCCGCCTTCCCTACCTGCCGGCGCGCTCCGCAGGCATGGCGGGCGA
TGCCGCTCAGGGGCGTGAAG

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKASAASSDNRRVTTPHSTRRDADIPEAAAPEPPAAPNLPATPPATRVPEGFQPAASSRPPEGDAEWRAQPVTHYENFPV
ASWLCPPALREPIAAIYGFARTADDIADEGDDTPAERLEVLAEYTTELHRIAAGHPPGARWAAVFGPLQRAIRAHALPVP
LLADLLSAFTQDIVRTSAGLTYAHRDELLDYCRRSANPVGRLLLHLYGIGDARALARSDAICTALQLINFWQDFSVDLPR
GRHYLTDADLARFGIDRALLQRQPIDPRARALVADNAAWARALMEEGAPLVHQLPGRIGWELRLVVQGGLRILDKVEALR
GDSLVRRPVLGGFDWLRMVARAVAM

Sequences:

>Translated_345_residues
MKASAASSDNRRVTTPHSTRRDADIPEAAAPEPPAAPNLPATPPATRVPEGFQPAASSRPPEGDAEWRAQPVTHYENFPV
ASWLCPPALREPIAAIYGFARTADDIADEGDDTPAERLEVLAEYTTELHRIAAGHPPGARWAAVFGPLQRAIRAHALPVP
LLADLLSAFTQDIVRTSAGLTYAHRDELLDYCRRSANPVGRLLLHLYGIGDARALARSDAICTALQLINFWQDFSVDLPR
GRHYLTDADLARFGIDRALLQRQPIDPRARALVADNAAWARALMEEGAPLVHQLPGRIGWELRLVVQGGLRILDKVEALR
GDSLVRRPVLGGFDWLRMVARAVAM
>Mature_345_residues
MKASAASSDNRRVTTPHSTRRDADIPEAAAPEPPAAPNLPATPPATRVPEGFQPAASSRPPEGDAEWRAQPVTHYENFPV
ASWLCPPALREPIAAIYGFARTADDIADEGDDTPAERLEVLAEYTTELHRIAAGHPPGARWAAVFGPLQRAIRAHALPVP
LLADLLSAFTQDIVRTSAGLTYAHRDELLDYCRRSANPVGRLLLHLYGIGDARALARSDAICTALQLINFWQDFSVDLPR
GRHYLTDADLARFGIDRALLQRQPIDPRARALVADNAAWARALMEEGAPLVHQLPGRIGWELRLVVQGGLRILDKVEALR
GDSLVRRPVLGGFDWLRMVARAVAM

Specific function: Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017827
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: NA

Molecular weight: Translated: 37720; Mature: 37720

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASAASSDNRRVTTPHSTRRDADIPEAAAPEPPAAPNLPATPPATRVPEGFQPAASSRP
CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PEGDAEWRAQPVTHYENFPVASWLCPPALREPIAAIYGFARTADDIADEGDDTPAERLEV
CCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LAEYTTELHRIAAGHPPGARWAAVFGPLQRAIRAHALPVPLLADLLSAFTQDIVRTSAGL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
TYAHRDELLDYCRRSANPVGRLLLHLYGIGDARALARSDAICTALQLINFWQDFSVDLPR
CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GRHYLTDADLARFGIDRALLQRQPIDPRARALVADNAAWARALMEEGAPLVHQLPGRIGW
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHCCCCCCC
ELRLVVQGGLRILDKVEALRGDSLVRRPVLGGFDWLRMVARAVAM
EEEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKASAASSDNRRVTTPHSTRRDADIPEAAAPEPPAAPNLPATPPATRVPEGFQPAASSRP
CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PEGDAEWRAQPVTHYENFPVASWLCPPALREPIAAIYGFARTADDIADEGDDTPAERLEV
CCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LAEYTTELHRIAAGHPPGARWAAVFGPLQRAIRAHALPVPLLADLLSAFTQDIVRTSAGL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
TYAHRDELLDYCRRSANPVGRLLLHLYGIGDARALARSDAICTALQLINFWQDFSVDLPR
CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GRHYLTDADLARFGIDRALLQRQPIDPRARALVADNAAWARALMEEGAPLVHQLPGRIGW
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHCCCCCCC
ELRLVVQGGLRILDKVEALRGDSLVRRPVLGGFDWLRMVARAVAM
EEEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]