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The map label for this gene is hfq [H]

Identifier: 120610116

GI number: 120610116

Start: 1570357

End: 1570608

Strand: Direct

Name: hfq [H]

Synonym: Aave_1429

Alternate gene names: 120610116

Gene position: 1570357-1570608 (Clockwise)

Preceding gene: 120610115

Following gene: 120610117

Centisome position: 29.34

GC content: 57.54

Gene sequence:

>252_bases
GTGAGCAACAAAGGTCAACTTCTTCAAGACCCCTTCCTGAACGCACTGCGCCGCGAGCACGTGCCTGTTTCCATCTACCT
GGTCAACGGTATCAAGCTGCAGGGGCAGATCGAATCCTTCGACCAATACGTCGTGCTGCTGCGCAACACGGTCACCCAGA
TGGTCTACAAGCACGCCATCTCCACCATCGTTCCGGGACGTGCCGTCAATTTCTCGACGGCCGAACCCGCGGATGCCGAA
TCCGGCAATTGA

Upstream 100 bases:

>100_bases
CGTAGGCCCGCATCCCGTCAATGTCCCGCTTCGCCCTGGGCGACGGAAGGCTGTGGTAAGGTGCAGCTTTACAACAATAT
TCCTGAACACGGAGAATATC

Downstream 100 bases:

>100_bases
CATTCCTGCGCCCGTGTAGGTACACCCTGGACAGGGCGCATGCCCCGTCCAGGCTGCTGTCTTGAGTTCTTCCTCATCCC
CTGAACCGCAATCCACTCCC

Product: RNA chaperone Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFSTAEPADAE
SGN

Sequences:

>Translated_83_residues
MSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFSTAEPADAE
SGN
>Mature_82_residues
SNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFSTAEPADAES
GN

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=80, Percent_Identity=73.75, Blast_Score=124, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9201; Mature: 9069

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STIVPGRAVNFSTAEPADAESGN
HHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STIVPGRAVNFSTAEPADAESGN
HHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA