Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ycgF [H]

Identifier: 120610095

GI number: 120610095

Start: 1546232

End: 1547230

Strand: Direct

Name: ycgF [H]

Synonym: Aave_1408

Alternate gene names: 120610095

Gene position: 1546232-1547230 (Clockwise)

Preceding gene: 120610091

Following gene: 120610101

Centisome position: 28.89

GC content: 71.57

Gene sequence:

>999_bases
TTGCTGCGGCCCCGGCGCGCGCACGGGCGCGTGGCTGCACTAAGCTTTCTTCTGGCAACTTCCGGGAACGCTCCCCTGAC
TTCCATGCACGCGCCAGCCCCTTCCGCTCCCGCCTGCTCCGCGTGCCGCAACGGCGCTGCGGAACTGGATTTCGACTTCA
CCATGGCTTTCCAGCCCATCGTGGACCTGCGCCATGGTGGCAGCGTGTTCGCCTACGAGGCGCTGGTGCGCGGCACGGAC
GGCAGCCCGGCTGCTTCGGTGCTGGCCCGCGTGAACGACGGCAACCGCTATGCATTCGACCAGGCCTGCCGGGTGCGGGC
GGTGGAGCTGGCCGCCCGGCTGGGCATCGACTGCCGGTTGAGCATCAACTTCCTGCCCAACGCGGTGTACCAGCCGGAGG
CCTGCATCCGGGTCACCCTCGAGGCCGCGCGACGCTGCGGATTTCCGGTCGAGCGCATCATCTTCGAGGTGGCGGAGCAC
GAGAACGCCCATGACCGCGAACACCTCAACCGCATCCTGCGCGCCTACCGGCGCCAGGGCCTGCGAACGGCCATCGACGA
TTTCGGTGCCGGCTATGCGGGGCTGGGGCTGCTGGCGGACTTCCAGCCCGACATGCTGAAGATCGACATGGCGCTGGTGC
GCGGCATCGGCGCCGACCCGGTACGCCAGGCGATTGCCCGCGGCGTGGTCTCGATGGGCGAGGCGCTGGGCATCGCGGTG
ATCGCCGAGGGCGTGGAAACCGAGGACGAGCTCCGTCCCCTGCGGGCCATGGGCGTCCACTTGTACCAGGGCTATCTCTT
CGCGCGCCCGGCGCTGGAAGCGCTGCCGGACGTGCAATGGCCCCAGGGCGCGGGCTTCGGGACGGGCCCCGGCGATGCCG
CGGAGGCGCTGCCTGGCGGTGCGGGGGGCACTGGCGCGCCACCGGCAGCGCTGCGCGCGATGCCCGGTGCGCGGGCACGC
GGCGGCGCGGGCATGTCGCTGGGATTCGGGCCCGGCTGA

Upstream 100 bases:

>100_bases
CGGTAGCTGAAAATCGCTACCGTGTGTGGCGCAAGCCACTTCGGTGCCGCGAAGTGTGGTGAGCGGCAGCCGCGCGGGCT
TTTGCGTAGGACGCCACCGC

Downstream 100 bases:

>100_bases
GCCCACCCGTCACTGGTTGGAGATGATGGTGAGCAGGTCGCCCCGCACATCGGGGTTGTCGGTGTACTTCTTGTAGAGCG
GCGCCATGCGGCGCACGTAG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: Blrp [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPIVDLRHGGSVFAYEALVRGTD
GSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRLSINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEH
ENAHDREHLNRILRAYRRQGLRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV
IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGGAGGTGAPPAALRAMPGARAR
GGAGMSLGFGPG

Sequences:

>Translated_332_residues
MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPIVDLRHGGSVFAYEALVRGTD
GSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRLSINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEH
ENAHDREHLNRILRAYRRQGLRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV
IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGGAGGTGAPPAALRAMPGARAR
GGAGMSLGFGPG
>Mature_332_residues
MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPIVDLRHGGSVFAYEALVRGTD
GSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRLSINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEH
ENAHDREHLNRILRAYRRQGLRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV
IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGGAGGTGAPPAALRAMPGARAR
GGAGMSLGFGPG

Specific function: Binds to and releases the YcgE repressor from its bound DNA target in a blue-light-dependent (470 nm) fashion. A shift to low temperature also triggers a YcgF-medisted relief of repression by YcgE, suggesting YcgF may serve as a thermometer. Blue light ma

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1787410, Length=229, Percent_Identity=33.1877729257642, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI87081980, Length=122, Percent_Identity=38.5245901639344, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790496, Length=225, Percent_Identity=31.5555555555556, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI87081845, Length=228, Percent_Identity=30.2631578947368, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87082096, Length=152, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI226510982, Length=234, Percent_Identity=32.0512820512821, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081921, Length=238, Percent_Identity=27.3109243697479, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=28.448275862069, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788849, Length=154, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786507, Length=100, Percent_Identity=34, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001792
- InterPro:   IPR007024
- InterPro:   IPR001633 [H]

Pfam domain/function: PF04940 BLUF; PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 34923; Mature: 34923

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPI
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
VDLRHGGSVFAYEALVRGTDGSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRL
HHHCCCCCEEEEHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEE
SINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEHENAHDREHLNRILRAYRRQG
EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
LRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV
HHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC
AGGTGAPPAALRAMPGARARGGAGMSLGFGPG
CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPI
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
VDLRHGGSVFAYEALVRGTDGSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRL
HHHCCCCCEEEEHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEE
SINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEHENAHDREHLNRILRAYRRQG
EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
LRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV
HHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC
AGGTGAPPAALRAMPGARARGGAGMSLGFGPG
CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]