Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120610082
Identifier: 120610082
GI number: 120610082
Start: 1528782
End: 1529744
Strand: Direct
Name: 120610082
Synonym: Aave_1395
Alternate gene names: NA
Gene position: 1528782-1529744 (Clockwise)
Preceding gene: 120610080
Following gene: 120610083
Centisome position: 28.56
GC content: 69.57
Gene sequence:
>963_bases ATGCAACGCAAGCACTTCCTCCGCGCCGCCCTGGCCGCCGCCGCCCTCGCGGCGGCGGCCGGCGCCATGGCGCAGACCTA CCCCAACAAGCCCGTGCGGATGGTGATTCCCTTCCCGCCGGGCGGTACGCTCGACGCTGTCGGCCGCATGCTCGCGCAGA AGCTCGGCGAGCAGACGGGCCAGTCCTTCGTCGTGGACAACAAGCCCGGCGGCAGCGGCGTGATCGGCGGCGACATCGTC GCCAAGGCCCCGGCGGACGGCTACACCCTGCTGTTCAGCGCCTCCACGCACACCACGGCGCCGATGACGCTCAAGTCCGT GCCCTACAACGTCACGCAGGATTTCATCCCCGTGGCCCTGGTCGCCAAGGCGCCGCTCTCGGTCGCGATCAACAAGGACC TGCCCATCACCGACATCAAGAGCCTGCTCGCCTACGCCCAGGCGCGCCCCGGCAAGATGACCTTCGCCGTCGGCTCCATC GGCTCGGCCGGCCATCTCTCCACCGAGCTGCTCAAGCGCGCCGGCAGGATCGACTACCTGGTCGTGCCGTACAAGGGCAC GGCGCCGGCCTTCCAGGACCTGATCGGCGGGCAGATCGACGGCTTCATCGACCCCATCCTCGGCTCGCTCCAGTACCACA AGAGCGGCATGCTGCGCGTGGTGGCCGTCACCTCGGCCCAGCGCGTGCCCAGCCTGCCGGACGTGCCCACCGTGGCCGAA ACCATCCCCGGCTACGAGTTCTACAGCTGGTACGGCCTCTGGGCTCCGGCCAGGACCCCGCCCGCGCTCGTGCAGCGCCT CAACGCCGAGGTCAACAAGGCCCTGGCCGAGATCGGCCCCAAGCTCAAGGAGCAGGGCCTGATCGTCACGCCCGGCAGCG CGGAAGATTTCGCCAGGTTCCAGCGCGAGGACATGGAGCGCTCCCAGAAGATCGTGACCGAGGGCCGCATCCGTGCCGAG TGA
Upstream 100 bases:
>100_bases TGCGCGGCGGTGAGTCAACCCGTTCAGTGGCCAAGGCCGGCCGGCCTGCCTTGACGACTGAAGTTGGAACCAACTGAGAC ATATAAGGAGACAAGACACC
Downstream 100 bases:
>100_bases CGCGCTTCCAGCGGCCCGCCCCGTGCCCCATGCCGTCGTCACCGGCAGCAGCAGCGGCATCGGCCGCGCCATCGCCGAAT CGCTGCTCGCCACCGGCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MQRKHFLRAALAAAALAAAAGAMAQTYPNKPVRMVIPFPPGGTLDAVGRMLAQKLGEQTGQSFVVDNKPGGSGVIGGDIV AKAPADGYTLLFSASTHTTAPMTLKSVPYNVTQDFIPVALVAKAPLSVAINKDLPITDIKSLLAYAQARPGKMTFAVGSI GSAGHLSTELLKRAGRIDYLVVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKSGMLRVVAVTSAQRVPSLPDVPTVAE TIPGYEFYSWYGLWAPARTPPALVQRLNAEVNKALAEIGPKLKEQGLIVTPGSAEDFARFQREDMERSQKIVTEGRIRAE
Sequences:
>Translated_320_residues MQRKHFLRAALAAAALAAAAGAMAQTYPNKPVRMVIPFPPGGTLDAVGRMLAQKLGEQTGQSFVVDNKPGGSGVIGGDIV AKAPADGYTLLFSASTHTTAPMTLKSVPYNVTQDFIPVALVAKAPLSVAINKDLPITDIKSLLAYAQARPGKMTFAVGSI GSAGHLSTELLKRAGRIDYLVVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKSGMLRVVAVTSAQRVPSLPDVPTVAE TIPGYEFYSWYGLWAPARTPPALVQRLNAEVNKALAEIGPKLKEQGLIVTPGSAEDFARFQREDMERSQKIVTEGRIRAE >Mature_320_residues MQRKHFLRAALAAAALAAAAGAMAQTYPNKPVRMVIPFPPGGTLDAVGRMLAQKLGEQTGQSFVVDNKPGGSGVIGGDIV AKAPADGYTLLFSASTHTTAPMTLKSVPYNVTQDFIPVALVAKAPLSVAINKDLPITDIKSLLAYAQARPGKMTFAVGSI GSAGHLSTELLKRAGRIDYLVVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKSGMLRVVAVTSAQRVPSLPDVPTVAE TIPGYEFYSWYGLWAPARTPPALVQRLNAEVNKALAEIGPKLKEQGLIVTPGSAEDFARFQREDMERSQKIVTEGRIRAE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34022; Mature: 34022
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRKHFLRAALAAAALAAAAGAMAQTYPNKPVRMVIPFPPGGTLDAVGRMLAQKLGEQTG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC QSFVVDNKPGGSGVIGGDIVAKAPADGYTLLFSASTHTTAPMTLKSVPYNVTQDFIPVAL CEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHH VAKAPLSVAINKDLPITDIKSLLAYAQARPGKMTFAVGSIGSAGHLSTELLKRAGRIDYL HHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEE VVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKSGMLRVVAVTSAQRVPSLPDVPTVAE EEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCCCHHHH TIPGYEFYSWYGLWAPARTPPALVQRLNAEVNKALAEIGPKLKEQGLIVTPGSAEDFARF HCCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCEEECCCCHHHHHHH QREDMERSQKIVTEGRIRAE HHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQRKHFLRAALAAAALAAAAGAMAQTYPNKPVRMVIPFPPGGTLDAVGRMLAQKLGEQTG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC QSFVVDNKPGGSGVIGGDIVAKAPADGYTLLFSASTHTTAPMTLKSVPYNVTQDFIPVAL CEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHH VAKAPLSVAINKDLPITDIKSLLAYAQARPGKMTFAVGSIGSAGHLSTELLKRAGRIDYL HHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEE VVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKSGMLRVVAVTSAQRVPSLPDVPTVAE EEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCCCHHHH TIPGYEFYSWYGLWAPARTPPALVQRLNAEVNKALAEIGPKLKEQGLIVTPGSAEDFARF HCCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCEEECCCCHHHHHHH QREDMERSQKIVTEGRIRAE HHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]