Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ybiL [C]
Identifier: 120610059
GI number: 120610059
Start: 1504262
End: 1505011
Strand: Reverse
Name: ybiL [C]
Synonym: Aave_1372
Alternate gene names: 120610059
Gene position: 1505011-1504262 (Counterclockwise)
Preceding gene: 120610061
Following gene: 120610058
Centisome position: 28.12
GC content: 72.53
Gene sequence:
>750_bases ATGCTGTCCTCCCCCGTCTCCACCCCTCCCCTGCCCCGCCGCGCCACTGCCTGGGGCGGCCCTTCCGGCACCGCGCTGGC CCGTGCGGGCCTGTGCTGCGGCGCAGTGCTGCTGACGGCCGTGTCCCTGGCCGCACGCGCGCAGGCCCAGGCCGGGAACG AGCGCCCCGCAACGCTCGGCGAAGTGCAGGTGAACGCGGACCGTTCCGGCGAGGCGGGCACGCCCGCGCGCCGCGCGCAG AGCGCATCGCGGCTGGGCCTGTCGGTGCTGGAGACGCCCCGCTCGGTGAGCGTGGTGGAGCGCGAGACGCTGGATCAGCA GGGCGCCACCACCGAGCGCGAGGTGCTGCGCAACGCTTCCGGCGTGGCCTCGCGCAGCGAGTACTACGGCTCCTATTCGC AGTTCTCGGTGCGCGGCCTGTGGGCCGACAACACCTACAACGACCTGCGGGACGGCGCCAAGTTCATGCACCTGATCGAT CCGCCGCTGTTCAATATCGACCGGGTGGAAGTGATCAAGGGGCCCGCGGCGCTGGAATACGGCCAGGTCGCGCCAGGCGG GCTGATCTACACGGTGGCCGACCTGGCCGTGGGCTGCGAGATGGCCGGCGGCCTGCGGCTGCAGGCCCACCTGAAGAACG CCACGGACAAGCGCTACGACCTCGACGGCACGAGCGATGCCGCGGGCTTCGCCTCGGTCACGCCGGGCGAGGCGCGCGCG CTGCAGGTCACGCTGGACTACGCCTTCTGA
Upstream 100 bases:
>100_bases GCGTTGAACGGCGCTCCCACCGCAAGCCAGTCCGGACAGGGCCCCCGCGCCCCGGCAGCCAGCGCACTCAGGTCTTTTTG CCGTCCCGAAGTCTGCCGCC
Downstream 100 bases:
>100_bases CCACCCGGAAGCAGCCGCCATGAAACCCACCCGTCCCCTCTGGAAGTACCGCCTGGCCATCGCGTCGCGCGTGCTGGCTG CCACGGTCGGCGGCTATGCG
Product: TonB-dependent receptor, plug
Products: NA
Alternate protein names: Ferrichrome-Iron Receptor; NB-Dependent Receptor Plug; NB-Dependent Receptor; Ferrichrome-Iron Transporter; NB-Dependent Receptor Protein; NB-Dependent Siderophore Receptor Protein; Putative Ferrichrome-Iron Receptor; NB-Dependent Siderophore Receptor Subfamily; Ferric Siderophore Receptor; NB Dependent Receptor; Ferrisiderophore Receptor Protein nB Dependent; Nb-Dependent Siderophore Receptor; N-B Dependent Protein; Hydroxamate-Type Ferrisiderophore Receptor; Outer Membrane Heme Receptor; Ferric Iron Uptake Protein; Ferrisiderophore Receptor Protein
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MLSSPVSTPPLPRRATAWGGPSGTALARAGLCCGAVLLTAVSLAARAQAQAGNERPATLGEVQVNADRSGEAGTPARRAQ SASRLGLSVLETPRSVSVVERETLDQQGATTEREVLRNASGVASRSEYYGSYSQFSVRGLWADNTYNDLRDGAKFMHLID PPLFNIDRVEVIKGPAALEYGQVAPGGLIYTVADLAVGCEMAGGLRLQAHLKNATDKRYDLDGTSDAAGFASVTPGEARA LQVTLDYAF
Sequences:
>Translated_249_residues MLSSPVSTPPLPRRATAWGGPSGTALARAGLCCGAVLLTAVSLAARAQAQAGNERPATLGEVQVNADRSGEAGTPARRAQ SASRLGLSVLETPRSVSVVERETLDQQGATTEREVLRNASGVASRSEYYGSYSQFSVRGLWADNTYNDLRDGAKFMHLID PPLFNIDRVEVIKGPAALEYGQVAPGGLIYTVADLAVGCEMAGGLRLQAHLKNATDKRYDLDGTSDAAGFASVTPGEARA LQVTLDYAF >Mature_249_residues MLSSPVSTPPLPRRATAWGGPSGTALARAGLCCGAVLLTAVSLAARAQAQAGNERPATLGEVQVNADRSGEAGTPARRAQ SASRLGLSVLETPRSVSVVERETLDQQGATTEREVLRNASGVASRSEYYGSYSQFSVRGLWADNTYNDLRDGAKFMHLID PPLFNIDRVEVIKGPAALEYGQVAPGGLIYTVADLAVGCEMAGGLRLQAHLKNATDKRYDLDGTSDAAGFASVTPGEARA LQVTLDYAF
Specific function: Probable Receptor, Tonb-Dependent, That Participates In Iron Transport. [C]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787024, Length=172, Percent_Identity=31.9767441860465, Blast_Score=61, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26170; Mature: 26170
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSSPVSTPPLPRRATAWGGPSGTALARAGLCCGAVLLTAVSLAARAQAQAGNERPATLG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE EVQVNADRSGEAGTPARRAQSASRLGLSVLETPRSVSVVERETLDQQGATTEREVLRNAS EEEECCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHCCC GVASRSEYYGSYSQFSVRGLWADNTYNDLRDGAKFMHLIDPPLFNIDRVEVIKGPAALEY CCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC GQVAPGGLIYTVADLAVGCEMAGGLRLQAHLKNATDKRYDLDGTSDAAGFASVTPGEARA CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCEE LQVTLDYAF EEEEEEECC >Mature Secondary Structure MLSSPVSTPPLPRRATAWGGPSGTALARAGLCCGAVLLTAVSLAARAQAQAGNERPATLG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE EVQVNADRSGEAGTPARRAQSASRLGLSVLETPRSVSVVERETLDQQGATTEREVLRNAS EEEECCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHCCC GVASRSEYYGSYSQFSVRGLWADNTYNDLRDGAKFMHLIDPPLFNIDRVEVIKGPAALEY CCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC GQVAPGGLIYTVADLAVGCEMAGGLRLQAHLKNATDKRYDLDGTSDAAGFASVTPGEARA CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCEE LQVTLDYAF EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA