Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is bepF [H]

Identifier: 120610049

GI number: 120610049

Start: 1489523

End: 1490779

Strand: Direct

Name: bepF [H]

Synonym: Aave_1362

Alternate gene names: 120610049

Gene position: 1489523-1490779 (Clockwise)

Preceding gene: 120610048

Following gene: 120610050

Centisome position: 27.83

GC content: 74.46

Gene sequence:

>1257_bases
ATGCCGTCATCCCAACCCGTTTCCCTCTTCTCGCCCGCGCGCCGCTGGTGGACCGCCGCCGGCGCCGCAGCCGCCATCGC
GGCCGGCGGCGGAGCCCTGTTCGGGCTGTCCGCCTCGCACGCCGAGGCGCCGGCCGCCGACGCCGCGCCCCCGGCCGTGC
CGGTGTCCGTCGCGGCCGTGGTGCAGCAGGACGTCGCGCTGTGGGACGAGTTCTCCGGCCGGCTGGAGGCCGTGCAGCGC
GTGGACATCCGCCCGCGCGTGGCCGGCGCCGTGCAGGCCGTGCACTTCCGCGAAGGCGCGCTGGTGAAGCAGGGCGACCT
GCTCTTCACCGTGGACCCCGCGCCCTACGCCGCGGAGGTGGACCGGGCCGACGCCCAGGTGGTGGCCGCCCAGGCGCGCC
TGACCTATACCCGCAGCGAAATGGAGCGCGCCACGCGCCTGTGGGAAGAGCACGCCATCGCCCAGCGCGAGCGCGACGAG
CGCGTGAATGCGCAGCGCGAAGCAGAGGCCAACCTGCGCGCCGCCCAGGCCGCGCTGCAGACGGCCCGGCTGAACCTGGG
CTACACCCAGGTGCGCGCGCCGGTCGCGGGCCGCGTGGGCCGCATCGAGGTCACCGTGGGCAACCTGGTGGGTTCCGGGG
CCGGTGCGCCGGTGCTGACCACGCTGGTGTCGGTGAGCCCGATCTACGCGAGCTTCGATACCGACGAGCAGATCGTGGCA
CGCGCGCTGGAGGGCCTGCGCTCCGGCCAGAGCGCCCGCGCCCTCATCGAGCGCATTCCCGTGCAGATGGGCACGGGCAC
GGCCGGCGGCACGCCGTATGCGGGCCATCTGCAGCTCATCGACAACCAGGTGGATGCGAGGAGCGGCACCGTGCGCGTGC
GCGCCGTTTTCGACAACGCCGACGGCGCGCTCATGCCGGGCCAGTTCGCCCGCATCCGCGTGGGCCGGGCGAAGAGCACC
CCGGCCGTGCTGATCAACGAGCGTGCCGTGGGCACGGACCAGAGCAAGAAGTTCGTGATGGTGGTGGGCGAGGGCAACAA
GGCCGAATACCGCGAGGTGCAGCTGGGCGCGCCGGTCGATGGCCTGCGCGTCGTCACCTCGGGCCTGAAGGCGGGCGAGC
GCATCGTCGTCAACGGCCTGCAGCGCGTGCGCCCCGGCGCCGTGGTCGCACCGCAGGACGTGCCCATGACCGCCAAGTCC
GAACTGGGCGGCGAGGGCGCGCAGGCGCGTGCCGCCGCCCGCCAGCCCGCAGCCTGA

Upstream 100 bases:

>100_bases
CCGGACCGCGGGCCGGAGGGGGAAGGCTTTGCCTGGCCGGTGCCGGCCCCGCTTTTTTGCTTGCGATACCACCGTTTTCA
GACATACCGAAGGATCTGCC

Downstream 100 bases:

>100_bases
GCGCCGGGCTTCAGAGAGCAGAGAACGACACCATGAACCTCTCCCGTTTCTTCATCGACCGCCCCATCTTCGCGGGGGTG
CTGTCGGTGCTCATCTTCCT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MPSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAVVQQDVALWDEFSGRLEAVQR
VDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEVDRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDE
RVNAQREAEANLRAAQAALQTARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA
RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNADGALMPGQFARIRVGRAKST
PAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVDGLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKS
ELGGEGAQARAAARQPAA

Sequences:

>Translated_418_residues
MPSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAVVQQDVALWDEFSGRLEAVQR
VDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEVDRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDE
RVNAQREAEANLRAAQAALQTARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA
RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNADGALMPGQFARIRVGRAKST
PAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVDGLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKS
ELGGEGAQARAAARQPAA
>Mature_417_residues
PSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAVVQQDVALWDEFSGRLEAVQRV
DIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEVDRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDER
VNAQREAEANLRAAQAALQTARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVAR
ALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNADGALMPGQFARIRVGRAKSTP
AVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVDGLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKSE
LGGEGAQARAAARQPAA

Specific function: May contribute to resistance to some drugs, such as deoxycholate, sodium dodecyl sulfate and nalidixic acid, in the absence of BepD and BepE [H]

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1789929, Length=346, Percent_Identity=31.7919075144509, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1786668, Length=341, Percent_Identity=33.4310850439883, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI87082036, Length=339, Percent_Identity=31.2684365781711, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1789665, Length=347, Percent_Identity=31.9884726224784, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI87081796, Length=334, Percent_Identity=25.748502994012, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081951, Length=250, Percent_Identity=26.4, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1789637, Length=172, Percent_Identity=31.9767441860465, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 43786; Mature: 43655

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAV
CCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
VQQDVALWDEFSGRLEAVQRVDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCEEECCCEEEEECCCCCHHHC
DRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDERVNAQREAEANLRAAQAALQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA
HHHCCCCHHHHCCCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHCCEEECCCCCHHHHH
RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNA
HHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECC
DGALMPGQFARIRVGRAKSTPAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVD
CCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC
GLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKSELGGEGAQARAAARQPAA
HHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCHHHHCCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
PSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAV
CCCCCCHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
VQQDVALWDEFSGRLEAVQRVDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEV
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCEEECCCEEEEECCCCCHHHC
DRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDERVNAQREAEANLRAAQAALQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA
HHHCCCCHHHHCCCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHCCEEECCCCCHHHHH
RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNA
HHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECC
DGALMPGQFARIRVGRAKSTPAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVD
CCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC
GLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKSELGGEGAQARAAARQPAA
HHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCHHHHCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]