Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is slyD [H]

Identifier: 120610018

GI number: 120610018

Start: 1456888

End: 1457412

Strand: Reverse

Name: slyD [H]

Synonym: Aave_1331

Alternate gene names: 120610018

Gene position: 1457412-1456888 (Counterclockwise)

Preceding gene: 120610021

Following gene: 120610014

Centisome position: 27.23

GC content: 67.43

Gene sequence:

>525_bases
ATGGAAATCAACCAACAATGCGTGGTCGCCTTGACCTGGATCCTGAAAGACACATTGGGAGAAGAGCTGGACGTGCTCGA
CGACCCGGTGGAATTCCTCGTCGGCGGCGACGACCTGTTCGCCCGCATCGAAGAGGCGCTGCAGGGCCACACCGCGGGCG
ACACCCTCGCGCTGCACCTGGAGCCCGAGGAGGCTTTCGGCGACTACCAGGACCAATTGCTGTTCCTCGAACCCCGCAGC
CGCTTCCCGGCCGACATCGAGGAAGGCATGACCATCGAGGGCAGCGCCCTGCCCGAAGGCTCCAACCCGGACGCCCCGCG
GGACGTGCTCTACACCGTGGCCCAGCTCTATCCCGAGCATGTGGTGCTGGACGGCAACCACCCCCTGGCCGGCATCGCGC
TGCGCCTGCACCTCACCGTGCAGGGCGTGCGCGAGGCCACCGAGGAGGAAATCGGTCGCGGCACGGCCGGCACCGGCTTC
TTCCGCATCCAGCCGCCCGACACGGGCGTGCCGCAGCTGCATTGA

Upstream 100 bases:

>100_bases
CCGCCCAGCAGGGCGAGGGGAATATGGGTATCCATGGAGAGAGAGCGGAAGGCGCACGCGCCGATGGCGCGGCCGGTGGA
CGAACTGCGACAATTCTCCT

Downstream 100 bases:

>100_bases
GCGCCAACAGGGCGGCGGTCGCAGCAACGCCGGCTGCCCGGCAGAGAGCACGGCCGAAAAAAAAGGACCCCTCGGGTCCT
TTTTCCTGGAGGCCACGGCG

Product: fkbp-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHLEPEEAFGDYQDQLLFLEPRS
RFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEHVVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGF
FRIQPPDTGVPQLH

Sequences:

>Translated_174_residues
MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHLEPEEAFGDYQDQLLFLEPRS
RFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEHVVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGF
FRIQPPDTGVPQLH
>Mature_174_residues
MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHLEPEEAFGDYQDQLLFLEPRS
RFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEHVVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGF
FRIQPPDTGVPQLH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=156, Percent_Identity=30.1282051282051, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 19052; Mature: 19052

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHL
CCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHEECCHHHHHHHHHHHCCCCCCCEEEEEE
EPEEAFGDYQDQLLFLEPRSRFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEH
CCHHHCCCCCCCEEEECCCCCCCCCHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCE
VVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGFFRIQPPDTGVPQLH
EEEECCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHL
CCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHEECCHHHHHHHHHHHCCCCCCCEEEEEE
EPEEAFGDYQDQLLFLEPRSRFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEH
CCHHHCCCCCCCEEEECCCCCCCCCHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCE
VVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGFFRIQPPDTGVPQLH
EEEECCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]