Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is slyD [H]
Identifier: 120610018
GI number: 120610018
Start: 1456888
End: 1457412
Strand: Reverse
Name: slyD [H]
Synonym: Aave_1331
Alternate gene names: 120610018
Gene position: 1457412-1456888 (Counterclockwise)
Preceding gene: 120610021
Following gene: 120610014
Centisome position: 27.23
GC content: 67.43
Gene sequence:
>525_bases ATGGAAATCAACCAACAATGCGTGGTCGCCTTGACCTGGATCCTGAAAGACACATTGGGAGAAGAGCTGGACGTGCTCGA CGACCCGGTGGAATTCCTCGTCGGCGGCGACGACCTGTTCGCCCGCATCGAAGAGGCGCTGCAGGGCCACACCGCGGGCG ACACCCTCGCGCTGCACCTGGAGCCCGAGGAGGCTTTCGGCGACTACCAGGACCAATTGCTGTTCCTCGAACCCCGCAGC CGCTTCCCGGCCGACATCGAGGAAGGCATGACCATCGAGGGCAGCGCCCTGCCCGAAGGCTCCAACCCGGACGCCCCGCG GGACGTGCTCTACACCGTGGCCCAGCTCTATCCCGAGCATGTGGTGCTGGACGGCAACCACCCCCTGGCCGGCATCGCGC TGCGCCTGCACCTCACCGTGCAGGGCGTGCGCGAGGCCACCGAGGAGGAAATCGGTCGCGGCACGGCCGGCACCGGCTTC TTCCGCATCCAGCCGCCCGACACGGGCGTGCCGCAGCTGCATTGA
Upstream 100 bases:
>100_bases CCGCCCAGCAGGGCGAGGGGAATATGGGTATCCATGGAGAGAGAGCGGAAGGCGCACGCGCCGATGGCGCGGCCGGTGGA CGAACTGCGACAATTCTCCT
Downstream 100 bases:
>100_bases GCGCCAACAGGGCGGCGGTCGCAGCAACGCCGGCTGCCCGGCAGAGAGCACGGCCGAAAAAAAAGGACCCCTCGGGTCCT TTTTCCTGGAGGCCACGGCG
Product: fkbp-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: PPIase; Metallochaperone slyD [H]
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHLEPEEAFGDYQDQLLFLEPRS RFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEHVVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGF FRIQPPDTGVPQLH
Sequences:
>Translated_174_residues MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHLEPEEAFGDYQDQLLFLEPRS RFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEHVVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGF FRIQPPDTGVPQLH >Mature_174_residues MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHLEPEEAFGDYQDQLLFLEPRS RFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEHVVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGF FRIQPPDTGVPQLH
Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]
COG id: COG1047
COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase FKBP-type domain [H]
Homologues:
Organism=Escherichia coli, GI1789748, Length=156, Percent_Identity=30.1282051282051, Blast_Score=67, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001179 [H]
Pfam domain/function: PF00254 FKBP_C [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 19052; Mature: 19052
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: PS50059 FKBP_PPIASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHL CCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHEECCHHHHHHHHHHHCCCCCCCEEEEEE EPEEAFGDYQDQLLFLEPRSRFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEH CCHHHCCCCCCCEEEECCCCCCCCCHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCE VVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGFFRIQPPDTGVPQLH EEEECCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure MEINQQCVVALTWILKDTLGEELDVLDDPVEFLVGGDDLFARIEEALQGHTAGDTLALHL CCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHEECCHHHHHHHHHHHCCCCCCCEEEEEE EPEEAFGDYQDQLLFLEPRSRFPADIEEGMTIEGSALPEGSNPDAPRDVLYTVAQLYPEH CCHHHCCCCCCCEEEECCCCCCCCCHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCE VVLDGNHPLAGIALRLHLTVQGVREATEEEIGRGTAGTGFFRIQPPDTGVPQLH EEEECCCCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]