Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yrdA [C]
Identifier: 120610005
GI number: 120610005
Start: 1446004
End: 1446528
Strand: Direct
Name: yrdA [C]
Synonym: Aave_1318
Alternate gene names: 120610005
Gene position: 1446004-1446528 (Clockwise)
Preceding gene: 120610001
Following gene: 120610006
Centisome position: 27.01
GC content: 68.0
Gene sequence:
>525_bases ATGGCGCTCTACGAACTCGACGGCATTTCTCCCCGCGTGGCCGATTCGGCCTGGGTGGCGGGCAGCGCGGAGGTGATGGG CAACGTGGTGCTCGGCGAGGACGCCAGCATCTGGTTCGGCGCGGTGCTGCGCGGCGACAACGAGACGCTCACCATCGGCG CGGGCAGCAACGTGCAGGATGGCAGCGTGCTCCATTCCGACTTCGGCCAGCCGCTGACGCTGGGCGAACGCGTGACGGTG GGCCACAAGGTCGTGCTGCATGGCTGCACCGTGGGCGACGAGTCGCTCATCGGCATCGGGGCCGTGGTGCTCAATGGTGC GAAGATCGGCCGCAACTGCCTCGTCGGCGCGGGCGCGCTGGTCACGGAAGGCAAGGAATTCCCGGACGGCTCGATGATAT TGGGCAGCCCGGCCAAGGCCGTGAGGCAGCTCACGCCGGAACAGATCGAAGGCCTGCGCAAGAGCGCACAGGTCTATATC GCGAATGCCCGGCGTTTCCGGGCGGGCCTGCACCGCACGGGTTGA
Upstream 100 bases:
>100_bases TGCAGGGCACGGTGTCGAAGCTCCATACCTACAATTCTAGGTTCCCGCCCCCACATGGAAGACCTGGGGCGGCGCATGAC GATGCACAGGAGACGAAACG
Downstream 100 bases:
>100_bases ACCCCGGCGTCCACGGCCCATTTGACAGCAGATGCAGAAAGACTCCAGGGTGTCAGAACTCCACAAGTTCCTCTTCGATG GCCTGCCGGTGCGCGGCATG
Product: hexapaptide repeat-containing transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MALYELDGISPRVADSAWVAGSAEVMGNVVLGEDASIWFGAVLRGDNETLTIGAGSNVQDGSVLHSDFGQPLTLGERVTV GHKVVLHGCTVGDESLIGIGAVVLNGAKIGRNCLVGAGALVTEGKEFPDGSMILGSPAKAVRQLTPEQIEGLRKSAQVYI ANARRFRAGLHRTG
Sequences:
>Translated_174_residues MALYELDGISPRVADSAWVAGSAEVMGNVVLGEDASIWFGAVLRGDNETLTIGAGSNVQDGSVLHSDFGQPLTLGERVTV GHKVVLHGCTVGDESLIGIGAVVLNGAKIGRNCLVGAGALVTEGKEFPDGSMILGSPAKAVRQLTPEQIEGLRKSAQVYI ANARRFRAGLHRTG >Mature_173_residues ALYELDGISPRVADSAWVAGSAEVMGNVVLGEDASIWFGAVLRGDNETLTIGAGSNVQDGSVLHSDFGQPLTLGERVTVG HKVVLHGCTVGDESLIGIGAVVLNGAKIGRNCLVGAGALVTEGKEFPDGSMILGSPAKAVRQLTPEQIEGLRKSAQVYIA NARRFRAGLHRTG
Specific function: Unknown
COG id: COG0663
COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-class carbonic anhydrase family [H]
Homologues:
Organism=Escherichia coli, GI87082240, Length=157, Percent_Identity=44.5859872611465, Blast_Score=139, Evalue=1e-34, Organism=Escherichia coli, GI1787667, Length=173, Percent_Identity=35.8381502890173, Blast_Score=126, Evalue=9e-31, Organism=Escherichia coli, GI87081681, Length=173, Percent_Identity=33.5260115606936, Blast_Score=108, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011004 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18035; Mature: 17904
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALYELDGISPRVADSAWVAGSAEVMGNVVLGEDASIWFGAVLRGDNETLTIGAGSNVQD CEEEECCCCCCCCCCCEECCCCHHHHEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCC GSVLHSDFGQPLTLGERVTVGHKVVLHGCTVGDESLIGIGAVVLNGAKIGRNCLVGAGAL CCEECCCCCCCCCCCCEEECCCEEEEEECCCCCCCCEEEEEEEECCCHHCCEEEEECCCE VTEGKEFPDGSMILGSPAKAVRQLTPEQIEGLRKSAQVYIANARRFRAGLHRTG EECCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCEEEEECHHHHHHHCCCCC >Mature Secondary Structure ALYELDGISPRVADSAWVAGSAEVMGNVVLGEDASIWFGAVLRGDNETLTIGAGSNVQD EEEECCCCCCCCCCCEECCCCHHHHEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCC GSVLHSDFGQPLTLGERVTVGHKVVLHGCTVGDESLIGIGAVVLNGAKIGRNCLVGAGAL CCEECCCCCCCCCCCCEEECCCEEEEEECCCCCCCCEEEEEEEECCCHHCCEEEEECCCE VTEGKEFPDGSMILGSPAKAVRQLTPEQIEGLRKSAQVYIANARRFRAGLHRTG EECCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCEEEEECHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]