Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is xerD [H]
Identifier: 120610000
GI number: 120610000
Start: 1440178
End: 1441107
Strand: Direct
Name: xerD [H]
Synonym: Aave_1313
Alternate gene names: 120610000
Gene position: 1440178-1441107 (Clockwise)
Preceding gene: 120609999
Following gene: 120610001
Centisome position: 26.91
GC content: 69.03
Gene sequence:
>930_bases GTGTTAACTTCGCGCCCCATGACCCTTTCGCCCGGCAGTCAGGCTGCCATCGACGCGTTCGTTGACACCCTCTGGCTCGA AGACGGCCTCTCGCGCAATACGCTGGCGGCCTACCGCCGCGACCTCGCGCTCTATGCGCAATGGCTCGGGGAGCATGTGC CCGATACCGCGGGCATGCTCGACGCCACAATGGAACACCACCTGCAGGCCTATTTCGCGGCGCGCCACGCCCAGACGCGC GCCACGTCGGCCAACCGCCGGCTTACGGTGCTGCGGCGGTATTTCCAGTGGGCCCTGCGGGAGCGCCGCATCGCCATCGA TCCTACCGTGCGCCTGCAGGCGGCGCGGCAGCCGCTGCGCGTGCCCAAGACCCTCTCGGCCGCGCAGGTGGAAGCGCTCC TCCAGTCCCCCGACACGTCCACGGCCCTGGGCCTGCGCGACCGCGCGATGCTGGAGCTCATGTACGCCAGCGGCCTGCGC GTGACCGAACTCGTCACCTTGAAGACCTACCACGCCGGCCTGGCCGAGGGCGTGCTGCGGGTGATGGGCAAGGGCAGCAA GGAGCGCCTCGTGCCCTTCGGGGAAGTCGCTGCGCAATGGCTGCAGCGGTACCTGGACCATGCCCGGGCGGACATTCTGG CAGGACAGCGGACCGACGACCTGTTCGTGACCCGGCGCGGCGCCGGCATGACGCGTGCCATGTTCTGGGTGGTCGTGAAA AAGCATGCGCAATCGGCCGGGATCCACGTGCCCCTGTCGCCGCACACGCTGCGCCATGCCTTCGCCACGCACCTGCTCAA CCACGGAGCGGACCTGCGGGTCGTGCAACTGCTGCTGGGCCATGCGGACATCTCCACCACGACGATCTACACCCATGTGG CGCGGGAGCGGCTCAAGGCGCTGCATGCCCAGCACCACCCGAGGGGCTGA
Upstream 100 bases:
>100_bases AGTTCGATGTTTACAAGGCGGTGGTGCAGAAGCAGAAGCTTTCGCTCGAGTGACCTGCCGCCCGGCCGTCCGGGCGGGCG GCATCAGGATCCGGGGACGC
Downstream 100 bases:
>100_bases AGGCCGGTCCGCGCCTGGCGGGCGCGCACAATCGCCGCTGCATTCCGCATCCTTTCCCGGGTTTTTCCCGTGTTTCCTGA AACGGTGGTTCCGATGATCG
Product: tyrosine recombinase XerD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTR ATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLR VTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPRG
Sequences:
>Translated_309_residues MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTR ATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLR VTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPRG >Mature_309_residues MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTR ATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLR VTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPRG
Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div
COG id: COG4974
COG function: function code L; Site-specific recombinase XerD
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789261, Length=298, Percent_Identity=54.0268456375839, Blast_Score=291, Evalue=3e-80, Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=35.2739726027397, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1790768, Length=174, Percent_Identity=32.183908045977, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011010 - InterPro: IPR013762 - InterPro: IPR002104 - InterPro: IPR010998 - InterPro: IPR023109 - InterPro: IPR004107 - InterPro: IPR011932 [H]
Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]
EC number: NA
Molecular weight: Translated: 34555; Mature: 34555
Theoretical pI: Translated: 10.95; Mature: 10.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGML CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH DATMEHHLQAYFAARHAQTRATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLR HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHCCCCC VPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLR CCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHHH VMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK HHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKA HHHHHCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LHAQHHPRG HHHHCCCCC >Mature Secondary Structure MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGML CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH DATMEHHLQAYFAARHAQTRATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLR HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHCCCCC VPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLR CCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHHH VMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK HHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKA HHHHHCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LHAQHHPRG HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]