Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is cysM [H]
Identifier: 120609974
GI number: 120609974
Start: 1413216
End: 1414295
Strand: Reverse
Name: cysM [H]
Synonym: Aave_1287
Alternate gene names: 120609974
Gene position: 1414295-1413216 (Counterclockwise)
Preceding gene: 120609975
Following gene: 120609973
Centisome position: 26.42
GC content: 70.37
Gene sequence:
>1080_bases ATGACCGCACTCCCCTCCTCCGGCGCCGCGCCCGGCGGCTGGCTGCACCAGGCCATCGCGCGCATCGAGGCCGACTACCA CCGCAGCGCCGACACGCATCTCATCCCGCTCAACCTGCCGGCCTATGCGGCCCACGGCATCGACCTCTACCTGAAGGACG AATCCACCCACCCCACGGGCAGCCTGAAGCACCGGCTCGCGCGCTCCCTGTTCCTGTACGCGCTGTGCAACGGCTGGGTG CACGAAGGCTCGACCATCGTCGAGTCCTCCAGCGGCTCCACGGCGGTGAGCGAGGCGTATTTCGCGCGGCTGCTGGGCCT GCCTTTCGTGGCGGTGATGCCGCGCCGCACTTCGGTGGAAAAGGTGGCGCAGATCGAGTTCCACGGCGGCCGCTGCCACT TCGTGGACAGCCCCGCCGAGGTGTATGACGCGGCACGGGCGATCGCGGCCGACACCGGGGGGCACTACATGGACCAGTTC ACCTATGCCGAACGGGCCACGGACTGGCGCGGCAACAACAACATCGCCGAGAGCATGTTCGTGCAGATGCAGCGCGAGCG CCACCCCGTGCCGCGCTGGATCGTGGTCGGTGCCGGCACGGGGGGCACGAGCGCCACCATCGGCCGCTACATCCGCTACC AGCAGTACGCGACGCAGGTCTGCGTGGCCGATCCGGCCGGCTCGGTGTTCAGCGCCTACTGGCGCTCGGGTGACGGCACG CTCACGGCCGCAGGCTCGCGCATCGAGGGCATCGGCCGCCCGCGCGTGGAGCCGAGTTTCATCCGCACGCTCGTGGACCA CATGGAGGAAGTGGCGGACACCGATTCGGTCGCGGCGATGCAGGTGCTCTCGCAATTGCTCGGGCGGCGCGTCGGCCCCT CCACGGGCACCAACTTCGCGGCCATGCTACGCCTGGCCAGCGGCATGCGCAAGCGCGGCGAGCAGGGCTCGCTGCTGTCG CTGCTGTGCGACTCGGGCGAACGCTACCTGCCCACCTACTTCGACGAGGCCTGGGTGGCCGGCACCATCGGCGACTGCGC GGCCGCGCGCGCCGGCATCCAGGCCAGCATGGACGCCTGA
Upstream 100 bases:
>100_bases TCCGAGACCGCGCGCATCGAGGCCAACCGGCCCTTCTTCGGGCTATAGGGCAGATGCGAACCGGCTCGCATGGCGGCCGC GCGCCTGCGATACTTCCCGC
Downstream 100 bases:
>100_bases CGATGCCGGGCCGCCCGACGCGCCGCGCCTGCCTCGCCGCAGCGGTCGGCGCCGCGTCCGCCAGCGCGTGGATGCCCTGG CCGGCACACGCGCTGCCCGC
Product: pyridoxal-5'-phosphate-dependent enzyme subunit beta
Products: NA
Alternate protein names: CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B [H]
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MTALPSSGAAPGGWLHQAIARIEADYHRSADTHLIPLNLPAYAAHGIDLYLKDESTHPTGSLKHRLARSLFLYALCNGWV HEGSTIVESSSGSTAVSEAYFARLLGLPFVAVMPRRTSVEKVAQIEFHGGRCHFVDSPAEVYDAARAIAADTGGHYMDQF TYAERATDWRGNNNIAESMFVQMQRERHPVPRWIVVGAGTGGTSATIGRYIRYQQYATQVCVADPAGSVFSAYWRSGDGT LTAAGSRIEGIGRPRVEPSFIRTLVDHMEEVADTDSVAAMQVLSQLLGRRVGPSTGTNFAAMLRLASGMRKRGEQGSLLS LLCDSGERYLPTYFDEAWVAGTIGDCAAARAGIQASMDA
Sequences:
>Translated_359_residues MTALPSSGAAPGGWLHQAIARIEADYHRSADTHLIPLNLPAYAAHGIDLYLKDESTHPTGSLKHRLARSLFLYALCNGWV HEGSTIVESSSGSTAVSEAYFARLLGLPFVAVMPRRTSVEKVAQIEFHGGRCHFVDSPAEVYDAARAIAADTGGHYMDQF TYAERATDWRGNNNIAESMFVQMQRERHPVPRWIVVGAGTGGTSATIGRYIRYQQYATQVCVADPAGSVFSAYWRSGDGT LTAAGSRIEGIGRPRVEPSFIRTLVDHMEEVADTDSVAAMQVLSQLLGRRVGPSTGTNFAAMLRLASGMRKRGEQGSLLS LLCDSGERYLPTYFDEAWVAGTIGDCAAARAGIQASMDA >Mature_358_residues TALPSSGAAPGGWLHQAIARIEADYHRSADTHLIPLNLPAYAAHGIDLYLKDESTHPTGSLKHRLARSLFLYALCNGWVH EGSTIVESSSGSTAVSEAYFARLLGLPFVAVMPRRTSVEKVAQIEFHGGRCHFVDSPAEVYDAARAIAADTGGHYMDQFT YAERATDWRGNNNIAESMFVQMQRERHPVPRWIVVGAGTGGTSATIGRYIRYQQYATQVCVADPAGSVFSAYWRSGDGTL TAAGSRIEGIGRPRVEPSFIRTLVDHMEEVADTDSVAAMQVLSQLLGRRVGPSTGTNFAAMLRLASGMRKRGEQGSLLSL LCDSGERYLPTYFDEAWVAGTIGDCAAARAGIQASMDA
Specific function: Two Cysteine Synthase Enzymes Are Found. Both Catalyze The Same Reaction. Cysteine Synthase B Can Also Use Thiosulfate In Place Of Sulfide To Give Cysteine Thiosulfonate As A Product. [C]
COG id: COG0031
COG function: function code E; Cysteine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cysteine synthase/cystathionine beta- synthase family [H]
Homologues:
Organism=Homo sapiens, GI295821202, Length=299, Percent_Identity=24.4147157190635, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI295821200, Length=299, Percent_Identity=24.4147157190635, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4557415, Length=299, Percent_Identity=24.4147157190635, Blast_Score=71, Evalue=1e-12, Organism=Escherichia coli, GI2367138, Length=296, Percent_Identity=26.6891891891892, Blast_Score=78, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17539800, Length=395, Percent_Identity=29.873417721519, Blast_Score=152, Evalue=3e-37, Organism=Caenorhabditis elegans, GI71996324, Length=355, Percent_Identity=32.6760563380282, Blast_Score=144, Evalue=5e-35, Organism=Caenorhabditis elegans, GI17539640, Length=380, Percent_Identity=26.8421052631579, Blast_Score=131, Evalue=7e-31, Organism=Caenorhabditis elegans, GI32566674, Length=307, Percent_Identity=26.0586319218241, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562970, Length=309, Percent_Identity=25.8899676375405, Blast_Score=79, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6321594, Length=329, Percent_Identity=27.0516717325228, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6321449, Length=325, Percent_Identity=27.3846153846154, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643623, Length=322, Percent_Identity=27.639751552795, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI20129101, Length=322, Percent_Identity=27.639751552795, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001216 - InterPro: IPR005856 - InterPro: IPR005859 - InterPro: IPR001926 - InterPro: IPR000634 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =2.5.1.47 [H]
Molecular weight: Translated: 38777; Mature: 38646
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALPSSGAAPGGWLHQAIARIEADYHRSADTHLIPLNLPAYAAHGIDLYLKDESTHPTG CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCEEEEEECCCCCCCH SLKHRLARSLFLYALCNGWVHEGSTIVESSSGSTAVSEAYFARLLGLPFVAVMPRRTSVE HHHHHHHHHHHHHHHHHCHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHH KVAQIEFHGGRCHFVDSPAEVYDAARAIAADTGGHYMDQFTYAERATDWRGNNNIAESMF HHHEEEECCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH VQMQRERHPVPRWIVVGAGTGGTSATIGRYIRYQQYATQVCVADPAGSVFSAYWRSGDGT HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCE LTAAGSRIEGIGRPRVEPSFIRTLVDHMEEVADTDSVAAMQVLSQLLGRRVGPSTGTNFA EEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH AMLRLASGMRKRGEQGSLLSLLCDSGERYLPTYFDEAWVAGTIGDCAAARAGIQASMDA HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHCCHHHCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure TALPSSGAAPGGWLHQAIARIEADYHRSADTHLIPLNLPAYAAHGIDLYLKDESTHPTG CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCEEEEEECCCCCCCH SLKHRLARSLFLYALCNGWVHEGSTIVESSSGSTAVSEAYFARLLGLPFVAVMPRRTSVE HHHHHHHHHHHHHHHHHCHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHH KVAQIEFHGGRCHFVDSPAEVYDAARAIAADTGGHYMDQFTYAERATDWRGNNNIAESMF HHHEEEECCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH VQMQRERHPVPRWIVVGAGTGGTSATIGRYIRYQQYATQVCVADPAGSVFSAYWRSGDGT HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCE LTAAGSRIEGIGRPRVEPSFIRTLVDHMEEVADTDSVAAMQVLSQLLGRRVGPSTGTNFA EEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH AMLRLASGMRKRGEQGSLLSLLCDSGERYLPTYFDEAWVAGTIGDCAAARAGIQASMDA HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHCCHHHCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9034314; 10688204 [H]