Click here to switch to the map view.

The map label for this gene is ymdC [H]

Identifier: 120609943

GI number: 120609943

Start: 1378992

End: 1380869

Strand: Reverse

Name: ymdC [H]

Synonym: Aave_1256

Alternate gene names: 120609943

Gene position: 1380869-1378992 (Counterclockwise)

Preceding gene: 120609966

Following gene: 120609941

Centisome position: 25.8

GC content: 73.16

Gene sequence:

>1878_bases
ATGCACCGCAGAATTCCCATGCCCGAAGGCCCTGCCGCCCTCCTTCCGCGCGCCCGAGCCGCCTTCGGGCGCTGGGGCGC
CATCCTGGCCCTCGCCCTGGCCACCGCCGCCTGCAGCGGCCTGCCGCAGAACGTGGAGCGTCCGGAATCCAGCGCCCTGC
CCGCCGCGGCCGCGGCGGACACCCCGCTCGCGCGCATCGTGGACGAACGCAGGCAGGCGGCCGGCGCCCGCCATGCCTCG
GGCTTCCTGCTGTTGAGCGGGCCGCAGGATGCCTACGGCAGCCGCCTGGCGCTGGTGGAGGCCGCCCGCAAGACGCTGGA
CCTGCAGTACTACGCCATCCACGCGGATGCCAGCAGCGAGCGGTTGCTGCGCGGCGTCGTCGCGGCGGCGCGCCGGGGGG
TCCGCGTGCGGGTGCTGCTCGACGACTTCCACAGCACGGGGCGCAATGCGCTGGTGATGGGCCCGGCGTTCCAGCCGAAC
ATCGAGATGCGCATGTTCAACCCCGTCGCCGGCCCGCGCGGCTCCATGGTGGGCCGGCTGTGGGGATCGCTCACCGACTT
CTCGCGCGTGCAGCAGCGCATGCACAACAAGCTCTTCATCGCCGACAACACCATGGGCGTGACCGGCGGGCGCAACCTGG
GCGACGCCTACTTCGGGCAGGCCGATTCCGGAAATTTCGTCGATCTGGACGTGCTCGCCGCCGGCCCCATCGTCGCGGAG
ATGTCGCGCAGTTTCGACGCCTACTGGAACAACCCGCGCGCCTACCCGGTGCAGTCGCTCATCACGCGCGAGGAACTGCG
GCGCCTGCGGCAGCAGACGCTCGACCGCTATCCGGAGCGCGGCGGCGCCGAGGGCGAGGCCGGAGCCGCGCCCGGCGATC
GCCCCCCCGGCGAAGGAAGAGCCCCTGCCGCGGCCAGCGACGGCCCCCGCCCCCCCGACGGGGAGCCGCGCCCCGCGCCC
GGCGAGCCCTCCGCCGACAAGCGCGCACGCGTCTGGAACGAGCAGCCGATGAACCTGGGCACGGCGCCCTTCGTCTGGGC
GCCGGCGGTCCTCCTCGCGGACCGGCCCGCGAAGATCGCCGCGGAGGGGGAAGCGGCCAGCATCCGCAGCACTGCGCCGG
GCACCGCGCTGGACGTGCGGGGGCTCCGGGGCACAGTGCCCCCCGCATCCCAGGCAGCCAGTCCGGCCGCGCCCTCGGGC
GGGCTGCTGCAGGCGTCGGCCGGACGTGCCGCAGAGGGCGATACCGTGGTGGACGGCCTGCTCCACCTGCTCGGCCAGGC
GCGCCAGGACCTGCTGGTCATCTCGCCCTACTTCGTGCCCGGCGACGACATGAAGCGCGCCTTCGCCGATGCCCGCGCCC
GCGGCGTGCGCATCCGCGTGCTCACCAACTCGCTGGCCTCCAACGATGCGCCGATCGCCCACGTGGGCTACGCACGGCAC
CGCGAGGAACTGCTGTCGTTGGGCCTGGAACTCTACGAGTTGCGCAGCGAGCAGGCCGGCGTGAAATCCGCCTTCGGCGA
TTCCGGCGCCAATGCCACCGGCAGCTCCCGCGCGATGCTCCACTCCAAGGTGCTGGTCCTGGACGGGCGGCTGATCGTCG
TCGGCTCCATGAACCTGGACCTGCGCTCGCAGCTGCAGAACACCGAGATCGCCCTGCTGATCCAGAGCCGCGATCTGTCG
CGCATGGCTTCGGCGCAGATCGAGACCGCCATGCGGGAGGACGCTTGGCATGTCGAGCGATTGCCGGACGGCAGCCTCGT
CTGGCGGGCTCCGCAGGGCAGCGGGCTGCAGGGCGCCACGCACGAGCCCGACGCCAGCCTGGGCCTGCGGATGCTGCTGC
GGCTGCTGGGGCCCCTGGCGCCGGACCATCTGCTGTAG

Upstream 100 bases:

>100_bases
CGGACCTCCCCGCACGATGGTGATCCCGCCACCGCCGCCGGGGCGTTGTCCGACAGCTCGGCGGCAGGGGCCGCGCTATA
CCTCGGGCACCCCGCACTCC

Downstream 100 bases:

>100_bases
GCAGGCCCTCTGGCAACGCTCAGGGCCTCACGCCCCGCCCGTCTGCGCCTCCACCCAGGCGGTGATGGTGCGCTGGTCGG
TGACCGTGCGCACCTGCTGG

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MHRRIPMPEGPAALLPRARAAFGRWGAILALALATAACSGLPQNVERPESSALPAAAAADTPLARIVDERRQAAGARHAS
GFLLLSGPQDAYGSRLALVEAARKTLDLQYYAIHADASSERLLRGVVAAARRGVRVRVLLDDFHSTGRNALVMGPAFQPN
IEMRMFNPVAGPRGSMVGRLWGSLTDFSRVQQRMHNKLFIADNTMGVTGGRNLGDAYFGQADSGNFVDLDVLAAGPIVAE
MSRSFDAYWNNPRAYPVQSLITREELRRLRQQTLDRYPERGGAEGEAGAAPGDRPPGEGRAPAAASDGPRPPDGEPRPAP
GEPSADKRARVWNEQPMNLGTAPFVWAPAVLLADRPAKIAAEGEAASIRSTAPGTALDVRGLRGTVPPASQAASPAAPSG
GLLQASAGRAAEGDTVVDGLLHLLGQARQDLLVISPYFVPGDDMKRAFADARARGVRIRVLTNSLASNDAPIAHVGYARH
REELLSLGLELYELRSEQAGVKSAFGDSGANATGSSRAMLHSKVLVLDGRLIVVGSMNLDLRSQLQNTEIALLIQSRDLS
RMASAQIETAMREDAWHVERLPDGSLVWRAPQGSGLQGATHEPDASLGLRMLLRLLGPLAPDHLL

Sequences:

>Translated_625_residues
MHRRIPMPEGPAALLPRARAAFGRWGAILALALATAACSGLPQNVERPESSALPAAAAADTPLARIVDERRQAAGARHAS
GFLLLSGPQDAYGSRLALVEAARKTLDLQYYAIHADASSERLLRGVVAAARRGVRVRVLLDDFHSTGRNALVMGPAFQPN
IEMRMFNPVAGPRGSMVGRLWGSLTDFSRVQQRMHNKLFIADNTMGVTGGRNLGDAYFGQADSGNFVDLDVLAAGPIVAE
MSRSFDAYWNNPRAYPVQSLITREELRRLRQQTLDRYPERGGAEGEAGAAPGDRPPGEGRAPAAASDGPRPPDGEPRPAP
GEPSADKRARVWNEQPMNLGTAPFVWAPAVLLADRPAKIAAEGEAASIRSTAPGTALDVRGLRGTVPPASQAASPAAPSG
GLLQASAGRAAEGDTVVDGLLHLLGQARQDLLVISPYFVPGDDMKRAFADARARGVRIRVLTNSLASNDAPIAHVGYARH
REELLSLGLELYELRSEQAGVKSAFGDSGANATGSSRAMLHSKVLVLDGRLIVVGSMNLDLRSQLQNTEIALLIQSRDLS
RMASAQIETAMREDAWHVERLPDGSLVWRAPQGSGLQGATHEPDASLGLRMLLRLLGPLAPDHLL
>Mature_625_residues
MHRRIPMPEGPAALLPRARAAFGRWGAILALALATAACSGLPQNVERPESSALPAAAAADTPLARIVDERRQAAGARHAS
GFLLLSGPQDAYGSRLALVEAARKTLDLQYYAIHADASSERLLRGVVAAARRGVRVRVLLDDFHSTGRNALVMGPAFQPN
IEMRMFNPVAGPRGSMVGRLWGSLTDFSRVQQRMHNKLFIADNTMGVTGGRNLGDAYFGQADSGNFVDLDVLAAGPIVAE
MSRSFDAYWNNPRAYPVQSLITREELRRLRQQTLDRYPERGGAEGEAGAAPGDRPPGEGRAPAAASDGPRPPDGEPRPAP
GEPSADKRARVWNEQPMNLGTAPFVWAPAVLLADRPAKIAAEGEAASIRSTAPGTALDVRGLRGTVPPASQAASPAAPSG
GLLQASAGRAAEGDTVVDGLLHLLGQARQDLLVISPYFVPGDDMKRAFADARARGVRIRVLTNSLASNDAPIAHVGYARH
REELLSLGLELYELRSEQAGVKSAFGDSGANATGSSRAMLHSKVLVLDGRLIVVGSMNLDLRSQLQNTEIALLIQSRDLS
RMASAQIETAMREDAWHVERLPDGSLVWRAPQGSGLQGATHEPDASLGLRMLLRLLGPLAPDHLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=548, Percent_Identity=32.4817518248175, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1787502, Length=146, Percent_Identity=31.5068493150685, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66522; Mature: 66522

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50035 PLD ; PS00238 OPSIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRRIPMPEGPAALLPRARAAFGRWGAILALALATAACSGLPQNVERPESSALPAAAAAD
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCC
TPLARIVDERRQAAGARHASGFLLLSGPQDAYGSRLALVEAARKTLDLQYYAIHADASSE
CHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHHHCEEEEEEECCCCHH
RLLRGVVAAARRGVRVRVLLDDFHSTGRNALVMGPAFQPNIEMRMFNPVAGPRGSMVGRL
HHHHHHHHHHHCCCEEEEEEEHHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHH
WGSLTDFSRVQQRMHNKLFIADNTMGVTGGRNLGDAYFGQADSGNFVDLDVLAAGPIVAE
HHHHHHHHHHHHHHCCEEEEECCCEECCCCCCCCHHHCCCCCCCCEEEEEEHCCCHHHHH
MSRSFDAYWNNPRAYPVQSLITREELRRLRQQTLDRYPERGGAEGEAGAAPGDRPPGEGR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
APAAASDGPRPPDGEPRPAPGEPSADKRARVWNEQPMNLGTAPFVWAPAVLLADRPAKIA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHCHHHCCCCCCCEE
AEGEAASIRSTAPGTALDVRGLRGTVPPASQAASPAAPSGGLLQASAGRAAEGDTVVDGL
ECCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCHHHHHHH
LHLLGQARQDLLVISPYFVPGDDMKRAFADARARGVRIRVLTNSLASNDAPIAHVGYARH
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECHHCCCCCCEEEHHHHHH
REELLSLGLELYELRSEQAGVKSAFGDSGANATGSSRAMLHSKVLVLDGRLIVVGSMNLD
HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHEEEEEECCEEEEEECCCCH
LRSQLQNTEIALLIQSRDLSRMASAQIETAMREDAWHVERLPDGSLVWRAPQGSGLQGAT
HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCCCC
HEPDASLGLRMLLRLLGPLAPDHLL
CCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHRRIPMPEGPAALLPRARAAFGRWGAILALALATAACSGLPQNVERPESSALPAAAAAD
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCC
TPLARIVDERRQAAGARHASGFLLLSGPQDAYGSRLALVEAARKTLDLQYYAIHADASSE
CHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHHHCEEEEEEECCCCHH
RLLRGVVAAARRGVRVRVLLDDFHSTGRNALVMGPAFQPNIEMRMFNPVAGPRGSMVGRL
HHHHHHHHHHHCCCEEEEEEEHHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHH
WGSLTDFSRVQQRMHNKLFIADNTMGVTGGRNLGDAYFGQADSGNFVDLDVLAAGPIVAE
HHHHHHHHHHHHHHCCEEEEECCCEECCCCCCCCHHHCCCCCCCCEEEEEEHCCCHHHHH
MSRSFDAYWNNPRAYPVQSLITREELRRLRQQTLDRYPERGGAEGEAGAAPGDRPPGEGR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
APAAASDGPRPPDGEPRPAPGEPSADKRARVWNEQPMNLGTAPFVWAPAVLLADRPAKIA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHCHHHCCCCCCCEE
AEGEAASIRSTAPGTALDVRGLRGTVPPASQAASPAAPSGGLLQASAGRAAEGDTVVDGL
ECCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCHHHHHHH
LHLLGQARQDLLVISPYFVPGDDMKRAFADARARGVRIRVLTNSLASNDAPIAHVGYARH
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECHHCCCCCCEEEHHHHHH
REELLSLGLELYELRSEQAGVKSAFGDSGANATGSSRAMLHSKVLVLDGRLIVVGSMNLD
HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHEEEEEECCEEEEEECCCCH
LRSQLQNTEIALLIQSRDLSRMASAQIETAMREDAWHVERLPDGSLVWRAPQGSGLQGAT
HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCCCC
HEPDASLGLRMLLRLLGPLAPDHLL
CCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]