| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is gdhII [H]
Identifier: 120609907
GI number: 120609907
Start: 1344838
End: 1345602
Strand: Reverse
Name: gdhII [H]
Synonym: Aave_1220
Alternate gene names: 120609907
Gene position: 1345602-1344838 (Counterclockwise)
Preceding gene: 120609908
Following gene: 120609906
Centisome position: 25.14
GC content: 73.2
Gene sequence:
>765_bases ATGCCTTCCCTCGACCACCGAATCGCCATCGTCACGGGCGCCAGCTCGGGCATCGGCAGGGCCGCCGCCCTGCTCTTCGC GCAGCAGGGCGCGCGCGTCGTGGCCGGAGCGCGGCGCCAGGCGGAGCTGGACCGGCTCGTGGCGGAGATCCGGGACGCCG GCGGACAGGCCACCGCGCTGGCCGGCGACGTCCGCGATGCCGCCTACGCCGGGGCCCTGGTGCAGGAGGCGGTCGGGCGG TTCGGCGGGCTGGACATCGCCTTCAACAACGCCGGCACGCTCGGGCCCCTCGGCTCCACGACCGACATCCATCCGGATGA CTGGCGCCACACGCTGGACACCAATCTCGGCAGCGCATTCCTCGGCGCGCGGCAGCAGATCCCGGCCATGCGGGAACGCG GCGGCGGCTCCGTCATCTTCACCTCCACCTTCGTCGGCTACACCGCCGGGTTCGCGGGCGTGGCGGCGTACGCAGCCAGC AAGTCCGGCCTCATCGGGCTGGCACAGGCCCTGGCGGCCGAATATGGCGCCGAAGGAATACGCGTCAATGCCCTGCTGCC CGGCGGCACCGACACCCCCATGGCACGCGAGATGAACGGCAGCCCCGAGGCCCTGGCCCAGGTAGCCCGGCTGCACGCCC TGCGGCGGCTGGCGCGCCCCGAGGAAATCGCGCAGGCGGCGCTCTACCTGGCGTCGGACGCTTCGTCTTTCGTCACCGGC ACCGCGATGCTGGTGGACGGGGGCATCTCGGTCCTGCGCGGCTGA
Upstream 100 bases:
>100_bases CTGCCGCCCGGCGCATCATGGGTCCGGATGCGGCCAGACGGCCAGCGCGGCCCTGCGCAGACTTCCAGGCATGTTCCACC ACCGCACCGGAGTCCGCAGC
Downstream 100 bases:
>100_bases ACAGCGCGGCCACGTGTGGCGCTGCCGCGACGCGGACCGGGCTCCCGCCGCCTGCATGCTAACTCCGCGTACGCCGCGCC CCCGTGCATCCGCTAAAATC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: GLCDH-II [H]
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MPSLDHRIAIVTGASSGIGRAAALLFAQQGARVVAGARRQAELDRLVAEIRDAGGQATALAGDVRDAAYAGALVQEAVGR FGGLDIAFNNAGTLGPLGSTTDIHPDDWRHTLDTNLGSAFLGARQQIPAMRERGGGSVIFTSTFVGYTAGFAGVAAYAAS KSGLIGLAQALAAEYGAEGIRVNALLPGGTDTPMAREMNGSPEALAQVARLHALRRLARPEEIAQAALYLASDASSFVTG TAMLVDGGISVLRG
Sequences:
>Translated_254_residues MPSLDHRIAIVTGASSGIGRAAALLFAQQGARVVAGARRQAELDRLVAEIRDAGGQATALAGDVRDAAYAGALVQEAVGR FGGLDIAFNNAGTLGPLGSTTDIHPDDWRHTLDTNLGSAFLGARQQIPAMRERGGGSVIFTSTFVGYTAGFAGVAAYAAS KSGLIGLAQALAAEYGAEGIRVNALLPGGTDTPMAREMNGSPEALAQVARLHALRRLARPEEIAQAALYLASDASSFVTG TAMLVDGGISVLRG >Mature_253_residues PSLDHRIAIVTGASSGIGRAAALLFAQQGARVVAGARRQAELDRLVAEIRDAGGQATALAGDVRDAAYAGALVQEAVGRF GGLDIAFNNAGTLGPLGSTTDIHPDDWRHTLDTNLGSAFLGARQQIPAMRERGGGSVIFTSTFVGYTAGFAGVAAYAASK SGLIGLAQALAAEYGAEGIRVNALLPGGTDTPMAREMNGSPEALAQVARLHALRRLARPEEIAQAALYLASDASSFVTGT AMLVDGGISVLRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=35.1020408163265, Blast_Score=144, Evalue=6e-35, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=34.5098039215686, Blast_Score=121, Evalue=7e-28, Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=32.7868852459016, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=36.2637362637363, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=32.9411764705882, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=30.6451612903226, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=34.7150259067358, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=28.7937743190661, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=31.3008130081301, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=32.1138211382114, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=32.15859030837, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=29.7619047619048, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI40254986, Length=248, Percent_Identity=29.4354838709677, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=28.0487804878049, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI32455239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI5031765, Length=195, Percent_Identity=32.3076923076923, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4503817, Length=224, Percent_Identity=29.0178571428571, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI4503301, Length=259, Percent_Identity=30.1158301158301, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=37.6146788990826, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=32.3232323232323, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI210032110, Length=199, Percent_Identity=27.6381909547739, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4758504, Length=273, Percent_Identity=29.3040293040293, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI223718074, Length=242, Percent_Identity=29.3388429752066, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=26.7676767676768, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=37.007874015748, Blast_Score=153, Evalue=8e-39, Organism=Escherichia coli, GI1787335, Length=261, Percent_Identity=35.632183908046, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=35.5102040816327, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=32.7935222672065, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1786812, Length=246, Percent_Identity=34.9593495934959, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=29.1497975708502, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=31.0483870967742, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=32.5396825396825, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787526, Length=240, Percent_Identity=32.5, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=29.4820717131474, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=34.1463414634146, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=28.448275862069, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786701, Length=213, Percent_Identity=29.1079812206573, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=31.9066147859922, Blast_Score=131, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=35.5212355212355, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=31.8897637795276, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=35.4581673306773, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=34.6613545816733, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.1969696969697, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=32.4427480916031, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=33.984375, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17568967, Length=208, Percent_Identity=33.6538461538462, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.8461538461538, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=28.5185185185185, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=28.3582089552239, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.9242424242424, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=28.5185185185185, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=29.1512915129151, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=25.6603773584906, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=28.3582089552239, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=29.0697674418605, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=33.0677290836653, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=28.7822878228782, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=28.1954887218045, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=33.1578947368421, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17563726, Length=255, Percent_Identity=28.6274509803922, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=29.6577946768061, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=30.6201550387597, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=27.6119402985075, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=29.9212598425197, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=30.1020408163265, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=31.1538461538462, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=29, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=28.2527881040892, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=25.7028112449799, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17558628, Length=191, Percent_Identity=32.9842931937173, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=25.6281407035176, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203117, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI32563809, Length=229, Percent_Identity=24.8908296943231, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17507613, Length=229, Percent_Identity=24.8908296943231, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=260, Percent_Identity=30, Blast_Score=99, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=28.9156626506024, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6322226, Length=226, Percent_Identity=27.4336283185841, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=229, Percent_Identity=25.764192139738, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32, Blast_Score=139, Evalue=1e-33, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=34.251968503937, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=34.8178137651822, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=32.8063241106719, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=32.3886639676113, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=37.8238341968912, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=32.4110671936759, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=30.2788844621514, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=30.46875, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=30.9623430962343, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357673, Length=231, Percent_Identity=32.4675324675325, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=30.1020408163265, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=25.6603773584906, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=27.1186440677966, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364494, Length=242, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=29.1208791208791, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=28.6549707602339, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI116007234, Length=199, Percent_Identity=30.6532663316583, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=29.6747967479675, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=28.6307053941909, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 25915; Mature: 25783
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSLDHRIAIVTGASSGIGRAAALLFAQQGARVVAGARRQAELDRLVAEIRDAGGQATAL CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE AGDVRDAAYAGALVQEAVGRFGGLDIAFNNAGTLGPLGSTTDIHPDDWRHTLDTNLGSAF HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHH LGARQQIPAMRERGGGSVIFTSTFVGYTAGFAGVAAYAASKSGLIGLAQALAAEYGAEGI HHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE RVNALLPGGTDTPMAREMNGSPEALAQVARLHALRRLARPEEIAQAALYLASDASSFVTG EEEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHH TAMLVDGGISVLRG HHHEECCCHHHHCC >Mature Secondary Structure PSLDHRIAIVTGASSGIGRAAALLFAQQGARVVAGARRQAELDRLVAEIRDAGGQATAL CCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE AGDVRDAAYAGALVQEAVGRFGGLDIAFNNAGTLGPLGSTTDIHPDDWRHTLDTNLGSAF HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHH LGARQQIPAMRERGGGSVIFTSTFVGYTAGFAGVAAYAASKSGLIGLAQALAAEYGAEGI HHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE RVNALLPGGTDTPMAREMNGSPEALAQVARLHALRRLARPEEIAQAALYLASDASSFVTG EEEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHH TAMLVDGGISVLRG HHHEECCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA