Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120609785
Identifier: 120609785
GI number: 120609785
Start: 1197317
End: 1198357
Strand: Reverse
Name: 120609785
Synonym: Aave_1093
Alternate gene names: NA
Gene position: 1198357-1197317 (Counterclockwise)
Preceding gene: 120609786
Following gene: 120609784
Centisome position: 22.39
GC content: 67.63
Gene sequence:
>1041_bases ATGACCAAGCGTTCCTTCCTGCAGTCCGCCGTGCTGCTCGCCGCCGCGGGCCTGCTGACGTCCGCCGCGCAGGCCCAGTC CGGCGCCCCCGCCCCCATCAAGTTCCAGCTCGACTGGCGCTTCGAAGGCCCCTCGGCCTTCTTCCTGCTGCCCGCGGCCA AAGGGTATTTCAAGGAGGCGGGCCTGAACGTGGCGGTGGATGCCGGCAACGGCTCGGGCGCCGCCGTGCAGCGCGTGGCC TCGGGTTCTTACGACATCGGCTTCGCGGACCTGGCCGCGGTGATGGAGTTCCACGGCAACAATCCCGACGCGCAGAACAA GCCCGTGGCCGTGATGATGGTCTACAACAACACGCCCGCCTCCGTCATGGCGCTGAAGAAAAGCGGCATCTCCAAACCTG CTGACCTGAACGGCAGGAAGCTCGGCGCGCCGGTGTTCGACGCCGGGCGCCGCGGCTTCCCGATCTTCGCCAAGGCCAAC CAGATCGCCGGCGTGCAATGGACCGCCATGGATCCGCCGCTGCGCGAAACCATGCTCGTGCGCGGCGACGTGGACGCCAT CACCGGGTTCACCTTCACCTCGCTGCTGAACCTGGAGGCGCGCGGCGCCAAGGCGTCGGACGTGGTCGTGCTGCCCTATG CCGATTACGGCGTGAAGCTCTACGGCAACGCCATCATCGCGAGCCCGAAGATCCTCAAGGAGAACCCCGAGGCGGTGAAG GCCTTCCTCAAGGCCTTCGCCCGCGGCGCGAAGGAAGTCATCGCCCATCCCGGCGCCGCCATCGCCTACGTGAAGGAACG CGACGGCATCGTGAACACCGCGCTCGAAACCCGCCGGCTGCAACTGGCCATCGACACGGTGGTCAACAGCCCGGATGCGC GCGCCGAAGGATTCGGCCAGGTCAAGCCGCAGCGGCTCGCGCTGATGGCCTCGCAGGTCTCCGACGCCTACAACACCAGG ACGCGCGTGGATCCCGCCACCGTATGGAACGGCAGCTTCCTGCCCCCGGCCGCCGAGCTGAACATCCTGCCGAAGAAGTA G
Upstream 100 bases:
>100_bases TACTGGTGCAATCCGCGTGAGCGATGCCCCAGGGCCGTTGGCGGACAGGCATCGATCTTGCTGATACTCCCGGTATCGAT CGACACGAATGGAGACCCCC
Downstream 100 bases:
>100_bases GCACTCCGCCCGGCCCGGCAGTACCGCCCGTCCACGCAGCCGCGTGGAGAGCCGGCGCCCGCCGGTGCCGTACGCCGCCG GACTTCCGGCACACCCCCCG
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; Twin-Arginine Translocation Pathway Signal; Diguanylate Cyclase; Membrane Lipoprotein Lipid Attachment Site; NMT1/THI5-Like Protein; NMT1/THI5 Like Domain-Containing Protein; Tat Pathway Signal Sequence Domain-Containing Protein; GGDEF Domain-Containing Protein; ABC Transporter Periplasmic Components; NMT1/THI5-Like Family; Nitrate/Sulfonate/Bicarbonate ABC Transporter; PAS Sensor Protein; Diguanylate Cyclase/Phosphodiesterase; Sulfonate/Nitrate Transport System; Sensory Transduction Histidine Kinase; Diguanylate Cyclase With PAS/PAC Sensor; NMT1/THI5-Ike Domain-Containing Protein; NMT1/THI5 Family Protein; ABC Transporter Periplasmic Protein; Signal Peptide; Signal Transduction Response Regulator; NMT1/THI5 Like Family; Tat Pathway Signal Sequence Domain Protein; ABC-Type Transporter Periplasmic Component; Lipoprotein; Exported Protein; Multi-Sensor Signal Transduction Histidine Kinase
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MTKRSFLQSAVLLAAAGLLTSAAQAQSGAPAPIKFQLDWRFEGPSAFFLLPAAKGYFKEAGLNVAVDAGNGSGAAVQRVA SGSYDIGFADLAAVMEFHGNNPDAQNKPVAVMMVYNNTPASVMALKKSGISKPADLNGRKLGAPVFDAGRRGFPIFAKAN QIAGVQWTAMDPPLRETMLVRGDVDAITGFTFTSLLNLEARGAKASDVVVLPYADYGVKLYGNAIIASPKILKENPEAVK AFLKAFARGAKEVIAHPGAAIAYVKERDGIVNTALETRRLQLAIDTVVNSPDARAEGFGQVKPQRLALMASQVSDAYNTR TRVDPATVWNGSFLPPAAELNILPKK
Sequences:
>Translated_346_residues MTKRSFLQSAVLLAAAGLLTSAAQAQSGAPAPIKFQLDWRFEGPSAFFLLPAAKGYFKEAGLNVAVDAGNGSGAAVQRVA SGSYDIGFADLAAVMEFHGNNPDAQNKPVAVMMVYNNTPASVMALKKSGISKPADLNGRKLGAPVFDAGRRGFPIFAKAN QIAGVQWTAMDPPLRETMLVRGDVDAITGFTFTSLLNLEARGAKASDVVVLPYADYGVKLYGNAIIASPKILKENPEAVK AFLKAFARGAKEVIAHPGAAIAYVKERDGIVNTALETRRLQLAIDTVVNSPDARAEGFGQVKPQRLALMASQVSDAYNTR TRVDPATVWNGSFLPPAAELNILPKK >Mature_345_residues TKRSFLQSAVLLAAAGLLTSAAQAQSGAPAPIKFQLDWRFEGPSAFFLLPAAKGYFKEAGLNVAVDAGNGSGAAVQRVAS GSYDIGFADLAAVMEFHGNNPDAQNKPVAVMMVYNNTPASVMALKKSGISKPADLNGRKLGAPVFDAGRRGFPIFAKANQ IAGVQWTAMDPPLRETMLVRGDVDAITGFTFTSLLNLEARGAKASDVVVLPYADYGVKLYGNAIIASPKILKENPEAVKA FLKAFARGAKEVIAHPGAAIAYVKERDGIVNTALETRRLQLAIDTVVNSPDARAEGFGQVKPQRLALMASQVSDAYNTRT RVDPATVWNGSFLPPAAELNILPKK
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6319957, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36632; Mature: 36501
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRSFLQSAVLLAAAGLLTSAAQAQSGAPAPIKFQLDWRFEGPSAFFLLPAAKGYFKEA CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEECCCCHHHHC GLNVAVDAGNGSGAAVQRVASGSYDIGFADLAAVMEFHGNNPDAQNKPVAVMMVYNNTPA CCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCH SVMALKKSGISKPADLNGRKLGAPVFDAGRRGFPIFAKANQIAGVQWTAMDPPLRETMLV HEEHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCEEEECCCCCHHHEEEE RGDVDAITGFTFTSLLNLEARGAKASDVVVLPYADYGVKLYGNAIIASPKILKENPEAVK ECCCHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCCEEEECCEEEECCHHHCCCHHHHH AFLKAFARGAKEVIAHPGAAIAYVKERDGIVNTALETRRLQLAIDTVVNSPDARAEGFGQ HHHHHHHHCHHHHHHCCCCEEEEEECCCCCHHHHHHHHEEEEEEEHHHCCCCCCCCCCCC VKPQRLALMASQVSDAYNTRTRVDPATVWNGSFLPPAAELNILPKK CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEECCC >Mature Secondary Structure TKRSFLQSAVLLAAAGLLTSAAQAQSGAPAPIKFQLDWRFEGPSAFFLLPAAKGYFKEA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEECCCCHHHHC GLNVAVDAGNGSGAAVQRVASGSYDIGFADLAAVMEFHGNNPDAQNKPVAVMMVYNNTPA CCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCH SVMALKKSGISKPADLNGRKLGAPVFDAGRRGFPIFAKANQIAGVQWTAMDPPLRETMLV HEEHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCEEEECCCCCHHHEEEE RGDVDAITGFTFTSLLNLEARGAKASDVVVLPYADYGVKLYGNAIIASPKILKENPEAVK ECCCHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCCEEEECCEEEECCHHHCCCHHHHH AFLKAFARGAKEVIAHPGAAIAYVKERDGIVNTALETRRLQLAIDTVVNSPDARAEGFGQ HHHHHHHHCHHHHHHCCCCEEEEEECCCCCHHHHHHHHEEEEEEEHHHCCCCCCCCCCCC VKPQRLALMASQVSDAYNTRTRVDPATVWNGSFLPPAAELNILPKK CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA