BacMap

Definition	Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession	NC_008752
Length	5,352,772

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The map label for this gene is gdhII [H]

Identifier: 120609781

GI number: 120609781

Start: 1191477

End: 1192256

Strand: Reverse

Name: gdhII [H]

Synonym: Aave_1089

Alternate gene names: 120609781

Gene position: 1192256-1191477 (Counterclockwise)

Preceding gene: 120609783

Following gene: 120609778

Centisome position: 22.27

GC content: 69.23

Gene sequence:

>780_bases
ATGGTCCAAGGACGCCTCGCAGGCCGCAAGGCCCTCGTCACCGGCAGCACACAGGGCATCGGCGCCGCCATCGCGCTGCG
GCTCGCGCAGGACGGTGCGGACGTCGTTCTCAACGGGCGCGATCCCGATGGTGCGCCCGGCGGGCTCATCGAGTGCATCG
CCGCGCTCGGGTGCCGCGCGGTGTACGTGGCCGCGGACCTGAGCAGCGGCGCGGCCGAAGCGGGCCGGCTGGTGGACGAG
GCCGCGCAGGCGCTCCGCGGGCTGGACATCCTGGTGAACAATGCGGGCGTGGAACGTCGCGCCGATTTCTGGGACGTGAC
CGAGGAAGACTACGACCTCGTGATGGACACCAACGTGAAGGGCCTGTTCTTCGCCACGCAGGCCTTCGTGCGGCACCTGC
GCGCGCGCAAGGACGAGGGCGCCATCGTCAACATCAGTTCGGTGCACGAGGAGATCGCCTTCCCGCATTTCGCTTCGTAC
TGCGCGAGCAAGGGCGCGCTGCGCATGCTGGCGCGCAACCTCGCGAGCGAACTCGCCCCGCTGGGCATCCGCGTCAACAA
CGTCGCGCCGGGTGCCATCGCCACCCCGATCAACGCACAACTGATGGACAACCCGGAGCAGTTGCGCGCGCTCAATGCGC
AGATCCCCCTGGGCCGCATGGGCCAGCCCGAGGACGTGGCCGGCCTGGTGGCCTTCCTGTCGGGAGACGAGGCGCGCTAC
ATCACAGGCGGCACCCACTTCGTGGACGGTGGCCTGACCTACCACTACACCGAGCAATAG

Upstream 100 bases:

>100_bases
ACGTATCCCACCCGCGGGAGGGCCGCCGGACTACGCGCAGGCCTTTCCGCCCTCCCTACAGTGGCGGGATATCCACCGGT
TCTTCAGGAAAGGCAACCCC

Downstream 100 bases:

>100_bases
GCGCCACGAGGCGGGGCCGCCGCGGCACGGAGCCGGGCGACACCCGCGCGGGGCTGGGGTGGAGGGCGCCCTGGCGCGCA
AACGTTTGCGCGCGCCGTGA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MVQGRLAGRKALVTGSTQGIGAAIALRLAQDGADVVLNGRDPDGAPGGLIECIAALGCRAVYVAADLSSGAAEAGRLVDE
AAQALRGLDILVNNAGVERRADFWDVTEEDYDLVMDTNVKGLFFATQAFVRHLRARKDEGAIVNISSVHEEIAFPHFASY
CASKGALRMLARNLASELAPLGIRVNNVAPGAIATPINAQLMDNPEQLRALNAQIPLGRMGQPEDVAGLVAFLSGDEARY
ITGGTHFVDGGLTYHYTEQ

Sequences:

>Translated_259_residues
MVQGRLAGRKALVTGSTQGIGAAIALRLAQDGADVVLNGRDPDGAPGGLIECIAALGCRAVYVAADLSSGAAEAGRLVDE
AAQALRGLDILVNNAGVERRADFWDVTEEDYDLVMDTNVKGLFFATQAFVRHLRARKDEGAIVNISSVHEEIAFPHFASY
CASKGALRMLARNLASELAPLGIRVNNVAPGAIATPINAQLMDNPEQLRALNAQIPLGRMGQPEDVAGLVAFLSGDEARY
ITGGTHFVDGGLTYHYTEQ
>Mature_259_residues
MVQGRLAGRKALVTGSTQGIGAAIALRLAQDGADVVLNGRDPDGAPGGLIECIAALGCRAVYVAADLSSGAAEAGRLVDE
AAQALRGLDILVNNAGVERRADFWDVTEEDYDLVMDTNVKGLFFATQAFVRHLRARKDEGAIVNISSVHEEIAFPHFASY
CASKGALRMLARNLASELAPLGIRVNNVAPGAIATPINAQLMDNPEQLRALNAQIPLGRMGQPEDVAGLVAFLSGDEARY
ITGGTHFVDGGLTYHYTEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=41.7670682730924, Blast_Score=150, Evalue=9e-37,
Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=35.8778625954198, Blast_Score=128, Evalue=4e-30,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=36.0323886639676, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=34.9206349206349, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=36.0655737704918, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=31.25, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=29.8850574712644, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=41.304347826087, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI59889578, Length=204, Percent_Identity=32.843137254902, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=32.5, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=37.7551020408163, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI40254986, Length=208, Percent_Identity=31.25, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4504505, Length=238, Percent_Identity=34.453781512605, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7706318, Length=207, Percent_Identity=29.951690821256, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI20149619, Length=208, Percent_Identity=33.6538461538462, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=30.0395256916996, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI109715829, Length=270, Percent_Identity=30, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=27.8350515463918, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI210032110, Length=203, Percent_Identity=29.064039408867, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=27.3809523809524, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI209862901, Length=216, Percent_Identity=30.0925925925926, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923983, Length=216, Percent_Identity=30.0925925925926, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI223718074, Length=205, Percent_Identity=30.2439024390244, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4503301, Length=164, Percent_Identity=25.609756097561, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI44680136, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI44680133, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI17738292, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI32455239, Length=162, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI5031765, Length=162, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=37.9310344827586, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=38.4615384615385, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=33.6032388663968, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=37.4485596707819, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1789378, Length=254, Percent_Identity=36.2204724409449, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=35.7429718875502, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=36.2139917695473, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=33.596837944664, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=29.6747967479675, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=34.412955465587, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=32.8125, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=31.6939890710383, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=27.9527559055118, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=28.9156626506024, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=26.6409266409266, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=254, Percent_Identity=30.3149606299213, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=37.1212121212121, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=36.6141732283465, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=35.5731225296443, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=32.9317269076305, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=33.4645669291339, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=32.2448979591837, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=34.3396226415094, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=35.4716981132075, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=33.8709677419355, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.4586466165414, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=32.8413284132841, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=30.8270676691729, Blast_Score=106, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=31.3207547169811, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17565030, Length=278, Percent_Identity=34.1726618705036, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=31.2, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=31.3207547169811, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=31.8352059925094, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=278, Percent_Identity=32.0143884892086, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.9548872180451, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=276, Percent_Identity=31.1594202898551, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=32.1033210332103, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=28.6821705426357, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71982365, Length=195, Percent_Identity=31.7948717948718, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=30.9433962264151, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.9433962264151, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=30.1960784313725, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=29.6153846153846, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=262, Percent_Identity=29.7709923664122, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=35.5, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=30.8900523560209, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI86565303, Length=277, Percent_Identity=27.4368231046931, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=264, Percent_Identity=31.0606060606061, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=196, Percent_Identity=30.6122448979592, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=31.0526315789474, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=187, Percent_Identity=31.0160427807487, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=246, Percent_Identity=29.2682926829268, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=36.71875, Blast_Score=137, Evalue=9e-33,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=35.8267716535433, Blast_Score=136, Evalue=1e-32,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=37.3015873015873, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=35.6, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=37.7049180327869, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=34.6774193548387, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=36.4754098360656, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24644337, Length=257, Percent_Identity=32.6848249027237, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24584752, Length=202, Percent_Identity=32.1782178217822, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=30.9803921568627, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584744, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=30.1020408163265, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=30.1020408163265, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=33, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=31.5, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281364892, Length=177, Percent_Identity=31.0734463276836, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580925, Length=195, Percent_Identity=29.7435897435897, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=27.319587628866, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 27326; Mature: 27326

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQGRLAGRKALVTGSTQGIGAAIALRLAQDGADVVLNGRDPDGAPGGLIECIAALGCRA
CCCCCCCCCEEEEECCCCCCCHHHEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCE
VYVAADLSSGAAEAGRLVDEAAQALRGLDILVNNAGVERRADFWDVTEEDYDLVMDTNVK
EEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
GLFFATQAFVRHLRARKDEGAIVNISSVHEEIAFPHFASYCASKGALRMLARNLASELAP
HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHH
LGIRVNNVAPGAIATPINAQLMDNPEQLRALNAQIPLGRMGQPEDVAGLVAFLSGDEARY
CCEEECCCCCCCEECCCCHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
ITGGTHFVDGGLTYHYTEQ
EECCCEEECCCEEEEEECC
>Mature Secondary Structure
MVQGRLAGRKALVTGSTQGIGAAIALRLAQDGADVVLNGRDPDGAPGGLIECIAALGCRA
CCCCCCCCCEEEEECCCCCCCHHHEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCE
VYVAADLSSGAAEAGRLVDEAAQALRGLDILVNNAGVERRADFWDVTEEDYDLVMDTNVK
EEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
GLFFATQAFVRHLRARKDEGAIVNISSVHEEIAFPHFASYCASKGALRMLARNLASELAP
HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHH
LGIRVNNVAPGAIATPINAQLMDNPEQLRALNAQIPLGRMGQPEDVAGLVAFLSGDEARY
CCEEECCCCCCCEECCCCHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
ITGGTHFVDGGLTYHYTEQ
EECCCEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA