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The map label for this gene is yjjV [H]

Identifier: 120609758

GI number: 120609758

Start: 1168660

End: 1169526

Strand: Direct

Name: yjjV [H]

Synonym: Aave_1065

Alternate gene names: 120609758

Gene position: 1168660-1169526 (Clockwise)

Preceding gene: 120609753

Following gene: 120609759

Centisome position: 21.83

GC content: 74.39

Gene sequence:

>867_bases
ATGGAGACCTGGATCGATACCCACTGCCACCTCGACGAGTTCGAAGCCCATGCGGGCCGGGACTACCTGGACAGGGTGCG
CGCGGACGCGGCGCGGGCCGGTGTCGCGCATTGCGTGCTGCCCGCGGTGGAGCGGGGCAACCTGGACGCCGTGCGCACGC
TGGCGCACCGCCACGGCGACAGCTATGCCCTGGGTATCCACCCGCTTTTCACGGGCCGGGCGGACGATGGCGATCTCGGT
GTGCTGGCGCGGGCGCTGGAGCAGCATGCGGCGGACCCGCGCCTCGTGGCCGTGGGCGAGATCGGGCTCGACTTCTTCGT
GAAGGACCTGGACCCGGCGCGGCAGGAGCATTTCTTCCGCGAGCAGCTGCGGCTCGCGCGGCGCAGCCGCCTGCCCGTGA
TCCTGCACACCCGGCGGTCGGTGGACAAGGTGCTCAAGGGCCTGCGCGACGTGGGTGCCGAGGGGGGCATCGCCCATGCG
TTCAACGGCAGCCTGCAGCAGGCGCGCGCCTTCATCGACCTGGGGTTCAAGCTCGGCTTCGGCGGGGCGGTGACCTTCGA
CCGCGCGCTGCAGCTGCGCCGGCTGGCGGCGGAGCTGCCGCTGGAGGCGATCGTGCTGGAGACCGACGCGCCGGACATCC
CGCCGCACTGGCTCTACGTGACGGCCGCCGAGCGGGCGGCGGGCGCGGCCCCGGCGCGCAACACGCCGGGCGAGCTGCCG
CGCATCGCGCAGGTGGTGGCGGAGCTGCGCGGCATGCCGGTGGAGGCGCTGGCCCGGGCCGCGCACGCGAATTCCCTGGC
GGCGCTGCCGCGGCTGGCGGGGCTGCTGCCGGCGACTGCGCAGGCCCGCCGCACGACCGCCGAATAG

Upstream 100 bases:

>100_bases
CCGCGTGTTTCAGGGCGGGGGCCAGGCGGCCTGGCGGCTTGCGCGGGACGCCGGAGCCGGCCGACGTGCGCGCCGCCCAT
GGTGCTGGCATGCTCGGGGG

Downstream 100 bases:

>100_bases
CTACCATAGGCTCGCATGCCCCGTTCGTCCCGTTTGCCCGATAGCCCCCCCGCCGACCCGCGGCCCGCCGCGCCTGTACG
CCTGGTGGGGCTGGCGCCGG

Product: TatD-like deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
METWIDTHCHLDEFEAHAGRDYLDRVRADAARAGVAHCVLPAVERGNLDAVRTLAHRHGDSYALGIHPLFTGRADDGDLG
VLARALEQHAADPRLVAVGEIGLDFFVKDLDPARQEHFFREQLRLARRSRLPVILHTRRSVDKVLKGLRDVGAEGGIAHA
FNGSLQQARAFIDLGFKLGFGGAVTFDRALQLRRLAAELPLEAIVLETDAPDIPPHWLYVTAAERAAGAAPARNTPGELP
RIAQVVAELRGMPVEALARAAHANSLAALPRLAGLLPATAQARRTTAE

Sequences:

>Translated_288_residues
METWIDTHCHLDEFEAHAGRDYLDRVRADAARAGVAHCVLPAVERGNLDAVRTLAHRHGDSYALGIHPLFTGRADDGDLG
VLARALEQHAADPRLVAVGEIGLDFFVKDLDPARQEHFFREQLRLARRSRLPVILHTRRSVDKVLKGLRDVGAEGGIAHA
FNGSLQQARAFIDLGFKLGFGGAVTFDRALQLRRLAAELPLEAIVLETDAPDIPPHWLYVTAAERAAGAAPARNTPGELP
RIAQVVAELRGMPVEALARAAHANSLAALPRLAGLLPATAQARRTTAE
>Mature_288_residues
METWIDTHCHLDEFEAHAGRDYLDRVRADAARAGVAHCVLPAVERGNLDAVRTLAHRHGDSYALGIHPLFTGRADDGDLG
VLARALEQHAADPRLVAVGEIGLDFFVKDLDPARQEHFFREQLRLARRSRLPVILHTRRSVDKVLKGLRDVGAEGGIAHA
FNGSLQQARAFIDLGFKLGFGGAVTFDRALQLRRLAAELPLEAIVLETDAPDIPPHWLYVTAAERAAGAAPARNTPGELP
RIAQVVAELRGMPVEALARAAHANSLAALPRLAGLLPATAQARRTTAE

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=286, Percent_Identity=29.7202797202797, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI110349734, Length=286, Percent_Identity=29.7202797202797, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI226061853, Length=293, Percent_Identity=29.3515358361775, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI226061614, Length=276, Percent_Identity=27.8985507246377, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI14042943, Length=276, Percent_Identity=26.8115942028986, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI225903439, Length=250, Percent_Identity=27.2, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI225903424, Length=227, Percent_Identity=26.8722466960352, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI226061595, Length=234, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=8e-14,
Organism=Escherichia coli, GI87082439, Length=264, Percent_Identity=41.6666666666667, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1787342, Length=267, Percent_Identity=32.5842696629214, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI48994985, Length=245, Percent_Identity=30.6122448979592, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=222, Percent_Identity=28.3783783783784, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71980746, Length=274, Percent_Identity=24.4525547445255, Blast_Score=74, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31215; Mature: 31215

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METWIDTHCHLDEFEAHAGRDYLDRVRADAARAGVAHCVLPAVERGNLDAVRTLAHRHGD
CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
SYALGIHPLFTGRADDGDLGVLARALEQHAADPRLVAVGEIGLDFFVKDLDPARQEHFFR
CEEEECEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHH
EQLRLARRSRLPVILHTRRSVDKVLKGLRDVGAEGGIAHAFNGSLQQARAFIDLGFKLGF
HHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCCEEHHCCCHHHHHHHHHHHHHEECC
GGAVTFDRALQLRRLAAELPLEAIVLETDAPDIPPHWLYVTAAERAAGAAPARNTPGELP
CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCH
RIAQVVAELRGMPVEALARAAHANSLAALPRLAGLLPATAQARRTTAE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure
METWIDTHCHLDEFEAHAGRDYLDRVRADAARAGVAHCVLPAVERGNLDAVRTLAHRHGD
CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
SYALGIHPLFTGRADDGDLGVLARALEQHAADPRLVAVGEIGLDFFVKDLDPARQEHFFR
CEEEECEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHH
EQLRLARRSRLPVILHTRRSVDKVLKGLRDVGAEGGIAHAFNGSLQQARAFIDLGFKLGF
HHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCCCEEHHCCCHHHHHHHHHHHHHEECC
GGAVTFDRALQLRRLAAELPLEAIVLETDAPDIPPHWLYVTAAERAAGAAPARNTPGELP
CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCH
RIAQVVAELRGMPVEALARAAHANSLAALPRLAGLLPATAQARRTTAE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]