Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120609743
Identifier: 120609743
GI number: 120609743
Start: 1153848
End: 1154234
Strand: Direct
Name: 120609743
Synonym: Aave_1050
Alternate gene names: NA
Gene position: 1153848-1154234 (Clockwise)
Preceding gene: 120609742
Following gene: 120609744
Centisome position: 21.56
GC content: 64.86
Gene sequence:
>387_bases ATGAGCCGCAACGACATCACCGACATCGAGACCGACCAGCGTGCCGATTCCCTGAAGACCGTCGGCTGGGTGAGCTACAT CCTGCACCTCATCGTGGCCGTGGGCGCCGTCATCCCGGGCGCGCAGCCCGGCGCGGCGCTGCTGATCATCGCCCTCGTCA TCGACCTGGTGAAGAAAACCGATGCCGAGGGCACGTGGCAGGCCTCGCACTTTTCCTGGCGCATCCGCACCGTGATCTGG GCCGGCGTGCTGTACGTGCTCACGGCGCCGCTGTGGATATTGATCTTCCCCGGCTGGATCGCCTGGGGCCTGATCTCCAT CTGGTTCCTCTACCGCATCGTGCGCGGCATGGTCGCCATGAACAAGGGCCAGGCCATCGATGTCTGA
Upstream 100 bases:
>100_bases AGCTGGAGCGCCGCGAAGGCACCAGCGGCATCGAGGAAAAGGCGCTGCGCAAGTCGCTGCAGCGCGCCGCCGAGGAAGCC CAACCCTGAGGACCATCCCC
Downstream 100 bases:
>100_bases ACGGGCTGCGCCGGCGCCGGGCTCGGTGCCCCTCAACCTCGCCCTGCAGGGCGGCGGATCGCACGGCGCGCTCACCTGGG GCGTGCTGGACGCGCTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MSRNDITDIETDQRADSLKTVGWVSYILHLIVAVGAVIPGAQPGAALLIIALVIDLVKKTDAEGTWQASHFSWRIRTVIW AGVLYVLTAPLWILIFPGWIAWGLISIWFLYRIVRGMVAMNKGQAIDV
Sequences:
>Translated_128_residues MSRNDITDIETDQRADSLKTVGWVSYILHLIVAVGAVIPGAQPGAALLIIALVIDLVKKTDAEGTWQASHFSWRIRTVIW AGVLYVLTAPLWILIFPGWIAWGLISIWFLYRIVRGMVAMNKGQAIDV >Mature_127_residues SRNDITDIETDQRADSLKTVGWVSYILHLIVAVGAVIPGAQPGAALLIIALVIDLVKKTDAEGTWQASHFSWRIRTVIWA GVLYVLTAPLWILIFPGWIAWGLISIWFLYRIVRGMVAMNKGQAIDV
Specific function: Unknown
COG id: COG3671
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14229; Mature: 14098
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNDITDIETDQRADSLKTVGWVSYILHLIVAVGAVIPGAQPGAALLIIALVIDLVKKT CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC DAEGTWQASHFSWRIRTVIWAGVLYVLTAPLWILIFPGWIAWGLISIWFLYRIVRGMVAM CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NKGQAIDV CCCCCCCC >Mature Secondary Structure SRNDITDIETDQRADSLKTVGWVSYILHLIVAVGAVIPGAQPGAALLIIALVIDLVKKT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC DAEGTWQASHFSWRIRTVIWAGVLYVLTAPLWILIFPGWIAWGLISIWFLYRIVRGMVAM CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NKGQAIDV CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA