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The map label for this gene is rfbB [H]

Identifier: 120609649

GI number: 120609649

Start: 1040829

End: 1042613

Strand: Direct

Name: rfbB [H]

Synonym: Aave_0955

Alternate gene names: 120609649

Gene position: 1040829-1042613 (Clockwise)

Preceding gene: 120609648

Following gene: 120609650

Centisome position: 19.44

GC content: 53.17

Gene sequence:

>1785_bases
ATGTCTGATCTTGCCGTGTGCTTGGATCGCGTATCCAAGATGTACAAGCTCTACCGGAATCCGAAGTACAGGATGTTGGA
AGCGCTTGGTATTCCTGTTGCGAAGTCTTCTTACGACGAGTTCTGGCCCTTGCGAGATATTTCGTTGCAAATCCGGAAAG
GTGAGCGTGTCGGGTTGATCGGGCGAAACGGGGCGGGCAAGAGTACCATCCTCAAATTGATCGCCAACCTGGTCCAGCCC
ACCGAGGGTACTGTAGCAGTCAAGGGAAAAATTCAGGCGTTGATGGAGTTGGGGACAGGTTTCCATCCGGAGTTCACTGG
ACGCGAGAACGTTATTTCCGCACTTGCATACCAAGGCATAACCGGCCGTCGCGCCAGAGCGCTCCTGGATGACGTGCTGG
ATTTTTCGGAACTCGAAGATTTCATCGACAAACCGATAAAAACTTACTCAGCAGGAATGTATTCACGGCTGGCATTCGCA
GCTGCTACTGCGGTAAGCCCGGAGATTCTGATCATTGACGAAATCCTCGGTGCTGGCGACGCATATTTCGCAGGCAAGTC
TGCGAGAAGAATGCGGGAGCTTACCGCGGATGGCTCCACCGTATTGTTCGTTTCGCACGATATGTCTGCAGTCCAGATGA
TCTGCGACCGGGCGGTATGGATCGAGCGCGGACAGATCATTGCTGACGGGCATCCCATCGAGGTCGGTAAGAAATATGCT
TCCTCCATCCGGAAACAGGAGGAAATGCGTTTGCGGGCGGTTAATCTCAAGTTGGGAAGGGGGGACACAAAGACCCTTGA
GGCAAAAGACCAGTCCGATCGTACATGCACCTTACGTTTCATCTCGGCCAGCGGTGGTGCACCGAAGCACCAGCCGGTGA
ACTTCTATTTCGTGAATCTCTATCATGGAGACGAACTGATCGAGGGCGTGAAAATTGGCGCATCTGCGGACGACGACAGG
AGTCAGCAGATACATCTGTTGACGGCGAAGGGCTTCATGAACTGGAGCGAACCGCTGCGCATGCCCGATGGAACCTCCTA
TCGGCAGTTTGTCGATATGCAGGGAAAATACTTGCATGCTCCGTTGAGCGTGGGATTGCCGCAAGGAATCGAAGGAGATT
TCCATCTCGAGATATCGCATTCAGGAAGCGGCCACGAGGAAATACTGCTGCAGATATTCAACGGCAATGACTATGCGACT
CTGGATCGGCTGACTGCCCAAGCCGGGATTCAAAGGGTCGCCCTGATGCGTGTGGAGAAAGAAGAGGAGAGCGAACCCGC
TTTGGAAGCTCCACCGGCGCCTGCGGCGCAGGTGCTGGCAGAGGAATCACCGCAAGAGGATTTTTCATATGGCGACGGCG
GATTGAGCATCGAGGCCGTCGATTTCCATGATGCTGCACTAGCATCACGGTTGACCTACGAATTCGGCGAAGCCCTCCAT
GTGACCGTGCAGTGGCGTTCCTCGAGGGCAATGCAGCGTGTTGCGTGCGTCATTTGCATATACGGCATGGATGGACGTTG
CATCAGCCAAGTTGTCTCCCCGCAGTTCTCTACCGATAATCGTAAAACTGCAGGAGAGCTCTCCGCATCATTTTCCCCGG
TGATGATCGGAGCGGGCGAATATGTAGTGTCTGTCGGTTTTTTTGAAGATCTGGAAGAAGGCTTGATGATCCCTGGAAAG
CCTCTTTGTGTTCAGGATAGAAAATATCGCCTGAAGATTTTGAGCCCTGAAAATATCAGGATGGAACGCGGTGTGGTTGT
TCATCCCGTGGAATGGACTATTTGA

Upstream 100 bases:

>100_bases
ATACGAATCGATATGCTTCTGATATTTTCGGCCATAAGTTTGGTCATGTTCCTGATAGGGGGGCATGTATTTTCACGATT
GAAGCCGCTTTTTGCTGACC

Downstream 100 bases:

>100_bases
GAATCATCATGCCAGATAGAGTCGACGTACAATATTTTTCCCAGGCCAAGCTTTGGGGGCAGCCGGTGCATGAACAAGTG
ATGGTTGCCAGGGATCTTGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 594; Mature: 593

Protein sequence:

>594_residues
MSDLAVCLDRVSKMYKLYRNPKYRMLEALGIPVAKSSYDEFWPLRDISLQIRKGERVGLIGRNGAGKSTILKLIANLVQP
TEGTVAVKGKIQALMELGTGFHPEFTGRENVISALAYQGITGRRARALLDDVLDFSELEDFIDKPIKTYSAGMYSRLAFA
AATAVSPEILIIDEILGAGDAYFAGKSARRMRELTADGSTVLFVSHDMSAVQMICDRAVWIERGQIIADGHPIEVGKKYA
SSIRKQEEMRLRAVNLKLGRGDTKTLEAKDQSDRTCTLRFISASGGAPKHQPVNFYFVNLYHGDELIEGVKIGASADDDR
SQQIHLLTAKGFMNWSEPLRMPDGTSYRQFVDMQGKYLHAPLSVGLPQGIEGDFHLEISHSGSGHEEILLQIFNGNDYAT
LDRLTAQAGIQRVALMRVEKEEESEPALEAPPAPAAQVLAEESPQEDFSYGDGGLSIEAVDFHDAALASRLTYEFGEALH
VTVQWRSSRAMQRVACVICIYGMDGRCISQVVSPQFSTDNRKTAGELSASFSPVMIGAGEYVVSVGFFEDLEEGLMIPGK
PLCVQDRKYRLKILSPENIRMERGVVVHPVEWTI

Sequences:

>Translated_594_residues
MSDLAVCLDRVSKMYKLYRNPKYRMLEALGIPVAKSSYDEFWPLRDISLQIRKGERVGLIGRNGAGKSTILKLIANLVQP
TEGTVAVKGKIQALMELGTGFHPEFTGRENVISALAYQGITGRRARALLDDVLDFSELEDFIDKPIKTYSAGMYSRLAFA
AATAVSPEILIIDEILGAGDAYFAGKSARRMRELTADGSTVLFVSHDMSAVQMICDRAVWIERGQIIADGHPIEVGKKYA
SSIRKQEEMRLRAVNLKLGRGDTKTLEAKDQSDRTCTLRFISASGGAPKHQPVNFYFVNLYHGDELIEGVKIGASADDDR
SQQIHLLTAKGFMNWSEPLRMPDGTSYRQFVDMQGKYLHAPLSVGLPQGIEGDFHLEISHSGSGHEEILLQIFNGNDYAT
LDRLTAQAGIQRVALMRVEKEEESEPALEAPPAPAAQVLAEESPQEDFSYGDGGLSIEAVDFHDAALASRLTYEFGEALH
VTVQWRSSRAMQRVACVICIYGMDGRCISQVVSPQFSTDNRKTAGELSASFSPVMIGAGEYVVSVGFFEDLEEGLMIPGK
PLCVQDRKYRLKILSPENIRMERGVVVHPVEWTI
>Mature_593_residues
SDLAVCLDRVSKMYKLYRNPKYRMLEALGIPVAKSSYDEFWPLRDISLQIRKGERVGLIGRNGAGKSTILKLIANLVQPT
EGTVAVKGKIQALMELGTGFHPEFTGRENVISALAYQGITGRRARALLDDVLDFSELEDFIDKPIKTYSAGMYSRLAFAA
ATAVSPEILIIDEILGAGDAYFAGKSARRMRELTADGSTVLFVSHDMSAVQMICDRAVWIERGQIIADGHPIEVGKKYAS
SIRKQEEMRLRAVNLKLGRGDTKTLEAKDQSDRTCTLRFISASGGAPKHQPVNFYFVNLYHGDELIEGVKIGASADDDRS
QQIHLLTAKGFMNWSEPLRMPDGTSYRQFVDMQGKYLHAPLSVGLPQGIEGDFHLEISHSGSGHEEILLQIFNGNDYATL
DRLTAQAGIQRVALMRVEKEEESEPALEAPPAPAAQVLAEESPQEDFSYGDGGLSIEAVDFHDAALASRLTYEFGEALHV
TVQWRSSRAMQRVACVICIYGMDGRCISQVVSPQFSTDNRKTAGELSASFSPVMIGAGEYVVSVGFFEDLEEGLMIPGKP
LCVQDRKYRLKILSPENIRMERGVVVHPVEWTI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=203, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI27477115, Length=216, Percent_Identity=27.3148148148148, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI153792144, Length=233, Percent_Identity=24.4635193133047, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI31657092, Length=215, Percent_Identity=28.3720930232558, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI27436953, Length=224, Percent_Identity=24.5535714285714, Blast_Score=80, Evalue=7e-15,
Organism=Homo sapiens, GI116734710, Length=211, Percent_Identity=28.9099526066351, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI47078218, Length=225, Percent_Identity=27.1111111111111, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI45446740, Length=225, Percent_Identity=27.1111111111111, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI27262624, Length=229, Percent_Identity=23.1441048034935, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI27262626, Length=229, Percent_Identity=23.1441048034935, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=30.4347826086957, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1789032, Length=255, Percent_Identity=27.4509803921569, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787029, Length=231, Percent_Identity=30.7359307359307, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=31.390134529148, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=29.126213592233, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081791, Length=214, Percent_Identity=27.1028037383178, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789672, Length=212, Percent_Identity=26.8867924528302, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=208, Percent_Identity=29.8076923076923, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786319, Length=197, Percent_Identity=28.4263959390863, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=30.622009569378, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787089, Length=212, Percent_Identity=27.8301886792453, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788897, Length=215, Percent_Identity=26.5116279069767, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1788450, Length=230, Percent_Identity=25.6521739130435, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787370, Length=201, Percent_Identity=27.8606965174129, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=218, Percent_Identity=27.0642201834862, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787758, Length=192, Percent_Identity=26.0416666666667, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1789593, Length=204, Percent_Identity=25, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=26.7326732673267, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787712, Length=200, Percent_Identity=26.5, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786563, Length=189, Percent_Identity=27.5132275132275, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1790739, Length=215, Percent_Identity=27.4418604651163, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=24.0909090909091, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI145693107, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=26.2135922330097, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788644, Length=222, Percent_Identity=26.5765765765766, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=25.7918552036199, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787547, Length=221, Percent_Identity=23.0769230769231, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790525, Length=214, Percent_Identity=23.8317757009346, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787105, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787792, Length=230, Percent_Identity=25.2173913043478, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=26.7281105990783, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=226, Percent_Identity=24.7787610619469, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=301, Percent_Identity=23.9202657807309, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=301, Percent_Identity=23.9202657807309, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=301, Percent_Identity=23.9202657807309, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=26.605504587156, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=26.8518518518519, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007184, Length=247, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221500365, Length=247, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28573571, Length=232, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28573573, Length=232, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=235, Percent_Identity=23.8297872340426, Blast_Score=73, Evalue=6e-13,
Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648314, Length=206, Percent_Identity=25.2427184466019, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666092, Length=208, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 65595; Mature: 65464

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLAVCLDRVSKMYKLYRNPKYRMLEALGIPVAKSSYDEFWPLRDISLQIRKGERVGLI
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHCCCCCCCEEEEECCCEEEEE
GRNGAGKSTILKLIANLVQPTEGTVAVKGKIQALMELGTGFHPEFTGRENVISALAYQGI
ECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
TGRRARALLDDVLDFSELEDFIDKPIKTYSAGMYSRLAFAAATAVSPEILIIDEILGAGD
CCHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCC
AYFAGKSARRMRELTADGSTVLFVSHDMSAVQMICDRAVWIERGQIIADGHPIEVGKKYA
CEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHEEECCEEEECCCCHHHHHHHH
SSIRKQEEMRLRAVNLKLGRGDTKTLEAKDQSDRTCTLRFISASGGAPKHQPVNFYFVNL
HHHHHHHHHEEEEEEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
YHGDELIEGVKIGASADDDRSQQIHLLTAKGFMNWSEPLRMPDGTSYRQFVDMQGKYLHA
EECHHHHCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEC
PLSVGLPQGIEGDFHLEISHSGSGHEEILLQIFNGNDYATLDRLTAQAGIQRVALMRVEK
CHHCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
EEESEPALEAPPAPAAQVLAEESPQEDFSYGDGGLSIEAVDFHDAALASRLTYEFGEALH
CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEE
VTVQWRSSRAMQRVACVICIYGMDGRCISQVVSPQFSTDNRKTAGELSASFSPVMIGAGE
EEEEECHHHHHHHEEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEECCC
YVVSVGFFEDLEEGLMIPGKPLCVQDRKYRLKILSPENIRMERGVVVHPVEWTI
EEEEECCHHHHHCCCCCCCCCEEECCCCEEEEEECCCCEEECCCEEEECCEECC
>Mature Secondary Structure 
SDLAVCLDRVSKMYKLYRNPKYRMLEALGIPVAKSSYDEFWPLRDISLQIRKGERVGLI
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHCCCCCCCEEEEECCCEEEEE
GRNGAGKSTILKLIANLVQPTEGTVAVKGKIQALMELGTGFHPEFTGRENVISALAYQGI
ECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
TGRRARALLDDVLDFSELEDFIDKPIKTYSAGMYSRLAFAAATAVSPEILIIDEILGAGD
CCHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCC
AYFAGKSARRMRELTADGSTVLFVSHDMSAVQMICDRAVWIERGQIIADGHPIEVGKKYA
CEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHEEECCEEEECCCCHHHHHHHH
SSIRKQEEMRLRAVNLKLGRGDTKTLEAKDQSDRTCTLRFISASGGAPKHQPVNFYFVNL
HHHHHHHHHEEEEEEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
YHGDELIEGVKIGASADDDRSQQIHLLTAKGFMNWSEPLRMPDGTSYRQFVDMQGKYLHA
EECHHHHCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEC
PLSVGLPQGIEGDFHLEISHSGSGHEEILLQIFNGNDYATLDRLTAQAGIQRVALMRVEK
CHHCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
EEESEPALEAPPAPAAQVLAEESPQEDFSYGDGGLSIEAVDFHDAALASRLTYEFGEALH
CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEE
VTVQWRSSRAMQRVACVICIYGMDGRCISQVVSPQFSTDNRKTAGELSASFSPVMIGAGE
EEEEECHHHHHHHEEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEECCC
YVVSVGFFEDLEEGLMIPGKPLCVQDRKYRLKILSPENIRMERGVVVHPVEWTI
EEEEECCHHHHHCCCCCCCCCEEECCCCEEEEEECCCCEEECCCEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]