Click here to switch to the map view.

The map label for this gene is rfbA [H]

Identifier: 120609648

GI number: 120609648

Start: 1040054

End: 1040836

Strand: Direct

Name: rfbA [H]

Synonym: Aave_0954

Alternate gene names: 120609648

Gene position: 1040054-1040836 (Clockwise)

Preceding gene: 120609647

Following gene: 120609649

Centisome position: 19.43

GC content: 48.4

Gene sequence:

>783_bases
ATGAATCTGATCCATCTCATCTGGGCGCACCGCTGGATCATCGCTGCGACCACCGTGGTCGATGTGAAGTCGAGATTCCG
GGGAACGGTGATAGGAATCCTCTGGACGGTGATCTATCCCATTTTGTTTCTCGGCATATATGCCGTGATCTACATCATGA
TATTCCACGTACGTGCTGCTGGCTACGGCACGGAAGAGTACGTGCTCCTGGTGTTCTGCGGGCTTGTACCTTTTCTGGGT
TTTTCCGAAGCGCTAGGAAACGGCGTGGGTTCGATCATCGCGAATAAAGGTCTCATAAAGAATACACTTTTTCCCATCGA
ATTGGTTCCAGTAAAGGCAGTTCTTTCGAGCAGCGTCACCATGGGTGTCGGCCTCCTGCTTCTGATATCTGCCTTGTGGA
TATCAGGAGTCTGGCATATGACCCAGCTTGCAGTGCCGCTGATACTGCTGCTGCAGCTCATGTTCTCGATCGGGCTGATC
TGGCTTCTGGCCGCTGTCAATGTCTTTATCCAGGACATAGGGCAGATAGTTGCCATATTTATTATGTTCCTGATGCTCGT
TTCGCCGATCGCATATACGCATGAAATGATACCCAAGGAGTTGATGCCTTTCATGTATCCCAATCCTTTGTATTATTTGA
TCATGCTGTATCGAGATGCTCTCTACTTTGGTTCGATACGAATCGATATGCTTCTGATATTTTCGGCCATAAGTTTGGTC
ATGTTCCTGATAGGGGGGCATGTATTTTCACGATTGAAGCCGCTTTTTGCTGACCATGTCTGA

Upstream 100 bases:

>100_bases
TGGACGCCATGGATGCAGGCCGCCCTGCTGCCTCGAAACCTGAAGTTTATGGCAAGGGTGACGCGGCAGACCGTATTCTG
GACATCATGGGCGCTGATCG

Downstream 100 bases:

>100_bases
TCTTGCCGTGTGCTTGGATCGCGTATCCAAGATGTACAAGCTCTACCGGAATCCGAAGTACAGGATGTTGGAAGCGCTTG
GTATTCCTGTTGCGAAGTCT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNLIHLIWAHRWIIAATTVVDVKSRFRGTVIGILWTVIYPILFLGIYAVIYIMIFHVRAAGYGTEEYVLLVFCGLVPFLG
FSEALGNGVGSIIANKGLIKNTLFPIELVPVKAVLSSSVTMGVGLLLLISALWISGVWHMTQLAVPLILLLQLMFSIGLI
WLLAAVNVFIQDIGQIVAIFIMFLMLVSPIAYTHEMIPKELMPFMYPNPLYYLIMLYRDALYFGSIRIDMLLIFSAISLV
MFLIGGHVFSRLKPLFADHV

Sequences:

>Translated_260_residues
MNLIHLIWAHRWIIAATTVVDVKSRFRGTVIGILWTVIYPILFLGIYAVIYIMIFHVRAAGYGTEEYVLLVFCGLVPFLG
FSEALGNGVGSIIANKGLIKNTLFPIELVPVKAVLSSSVTMGVGLLLLISALWISGVWHMTQLAVPLILLLQLMFSIGLI
WLLAAVNVFIQDIGQIVAIFIMFLMLVSPIAYTHEMIPKELMPFMYPNPLYYLIMLYRDALYFGSIRIDMLLIFSAISLV
MFLIGGHVFSRLKPLFADHV
>Mature_260_residues
MNLIHLIWAHRWIIAATTVVDVKSRFRGTVIGILWTVIYPILFLGIYAVIYIMIFHVRAAGYGTEEYVLLVFCGLVPFLG
FSEALGNGVGSIIANKGLIKNTLFPIELVPVKAVLSSSVTMGVGLLLLISALWISGVWHMTQLAVPLILLLQLMFSIGLI
WLLAAVNVFIQDIGQIVAIFIMFLMLVSPIAYTHEMIPKELMPFMYPNPLYYLIMLYRDALYFGSIRIDMLLIFSAISLV
MFLIGGHVFSRLKPLFADHV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29137; Mature: 29137

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]