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The map label for this gene is soxC [H]

Identifier: 120609571

GI number: 120609571

Start: 953529

End: 954818

Strand: Reverse

Name: soxC [H]

Synonym: Aave_0877

Alternate gene names: 120609571

Gene position: 954818-953529 (Counterclockwise)

Preceding gene: 120609572

Following gene: 120609570

Centisome position: 17.84

GC content: 72.02

Gene sequence:

>1290_bases
ATGTCCGCCGTGCTCCAGAACCCCTCCACCGAACAGCCCGTCCGCCCGCATGCCCTGCAGGCCGCGCACCGCCCCGGCCA
GCCCGTGCCGGGACTGCCCCGCCCCCCGGCCCCGGCCCACGTGGTCCGCGACGACGCCGAGGCCATCGCCATCGCCCATG
GCCTGGCCGAGCGCTTCCGCGAGGGCGCCGCGCTGCGCGACCGCGACCGGCTCTGGCCGGTGGAGGAGATCGATGCCTAT
TCCCAGAGCGGGCTCTGGGCCATCAACGTGCCGCGCGCCCACGGCGGCGCGGAAGTGTCTTACGCCACGCTGGCGGAGGT
CATCGCGATCATCTCCGCGGCCGATCCTTCCATCGGCCAGATCACCCAGAACCACCTGGGCATCGCGGCCGCCATCCGCA
CGGTGTCGGACGAGGCGCAGCAGCGCCTGCTGTTCGGCGAGATCCTCGGGGGGGCGCGCTTCGGCAACGCCTTCTCCGAA
TCGGGCTCGCGCCGCGCCGCGGACTTCGAGACCCGCTTCATCGAGGACGGCGACCACGTCGTGGTGACGGGGCGCAAGTT
CTACTCCAGCGGCGCGCTGCTGGCGCACTACGTGCCCATCGTGGCCAACGATCCGCGGGGCCGTGCCTGGTATGCCATCG
CCGAGCGCGACGCACCCGGCCTGTCGGTCATCGACGACTGGAGCAGCTTCGGCCAGCGCACCACGCTGAGCGGCACCGTG
CTCATCGACCGGGTGCGCGTGCCCCGCACCCACCTCGTTCCGGCCTGGAAGGGCTACGAACGGCCTTCCGCGGACGGCGC
GATCTTCCAGATCATCCAGGCTGCGGTGGACGTGGGCATCGCGCGCAACGCCATCGAGGATACGCAGGACTTCGTGCGCA
CCAGGACCCGACCCTGGGTGGACAGCCAGCGCGACACCGCCGCCGAAGACCCCTACACCATCCACGCGGTGGGCGACCTG
CAGATCCGCCTGCACGCGAGCGAGGCGCTGCTGGAGCGCGCGGGCCGCGCCATCGACCGCGCCCTGGCCGCGCCCGATGC
GGACACCGTGGCCGCCGCGCAGATCGCCGTGGCCGAGGCCAAGGTGCTCTCCACCGAGATCGCCCTGCAGGCCGCCAACA
AGCTCTTCGAGCTCGGCGGAACGCGCTCCACGCTGGGCCAGTACCACCTGGACCGCCACTGGCGCAACGCGCGCACCCAC
ACGCTGCACGACCCGGTGCGGTGGAAGTACGCGATCGTGGGCAACTACCACCTCAACGGGGTGAGGCCCCCTTTCCACGC
GTGGAGCTGA

Upstream 100 bases:

>100_bases
GCCGCAGTCCCGGCCGCAGCCCGCCCTGGAGGCGGAGGCGGCCTGAGCCAGCGCCCCGCCCCGCACATCCGCGCCCACGA
CCGATCGAGAGGAATCCGCC

Downstream 100 bases:

>100_bases
CCTCCGCGGCTGCCGGGCGGGGACGGAAATGAAAAAAGCCTTGCAGGCTGGAGGCTTGCAAGGCTTTCTGTTTTTGGTGG
CGCTTCACGGATTCGAACCG

Product: acyl-CoA dehydrogenase type 2

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSAVLQNPSTEQPVRPHALQAAHRPGQPVPGLPRPPAPAHVVRDDAEAIAIAHGLAERFREGAALRDRDRLWPVEEIDAY
SQSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQITQNHLGIAAAIRTVSDEAQQRLLFGEILGGARFGNAFSE
SGSRRAADFETRFIEDGDHVVVTGRKFYSSGALLAHYVPIVANDPRGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTV
LIDRVRVPRTHLVPAWKGYERPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTRTRPWVDSQRDTAAEDPYTIHAVGDL
QIRLHASEALLERAGRAIDRALAAPDADTVAAAQIAVAEAKVLSTEIALQAANKLFELGGTRSTLGQYHLDRHWRNARTH
TLHDPVRWKYAIVGNYHLNGVRPPFHAWS

Sequences:

>Translated_429_residues
MSAVLQNPSTEQPVRPHALQAAHRPGQPVPGLPRPPAPAHVVRDDAEAIAIAHGLAERFREGAALRDRDRLWPVEEIDAY
SQSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQITQNHLGIAAAIRTVSDEAQQRLLFGEILGGARFGNAFSE
SGSRRAADFETRFIEDGDHVVVTGRKFYSSGALLAHYVPIVANDPRGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTV
LIDRVRVPRTHLVPAWKGYERPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTRTRPWVDSQRDTAAEDPYTIHAVGDL
QIRLHASEALLERAGRAIDRALAAPDADTVAAAQIAVAEAKVLSTEIALQAANKLFELGGTRSTLGQYHLDRHWRNARTH
TLHDPVRWKYAIVGNYHLNGVRPPFHAWS
>Mature_428_residues
SAVLQNPSTEQPVRPHALQAAHRPGQPVPGLPRPPAPAHVVRDDAEAIAIAHGLAERFREGAALRDRDRLWPVEEIDAYS
QSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQITQNHLGIAAAIRTVSDEAQQRLLFGEILGGARFGNAFSES
GSRRAADFETRFIEDGDHVVVTGRKFYSSGALLAHYVPIVANDPRGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTVL
IDRVRVPRTHLVPAWKGYERPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTRTRPWVDSQRDTAAEDPYTIHAVGDLQ
IRLHASEALLERAGRAIDRALAAPDADTVAAAQIAVAEAKVLSTEIALQAANKLFELGGTRSTLGQYHLDRHWRNARTHT
LHDPVRWKYAIVGNYHLNGVRPPFHAWS

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17508101, Length=335, Percent_Identity=24.4776119402985, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 46788; Mature: 46657

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVLQNPSTEQPVRPHALQAAHRPGQPVPGLPRPPAPAHVVRDDAEAIAIAHGLAERFR
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH
EGAALRDRDRLWPVEEIDAYSQSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQ
CCCCCCCHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
ITQNHLGIAAAIRTVSDEAQQRLLFGEILGGARFGNAFSESGSRRAADFETRFIEDGDHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHEECCCCEE
VVTGRKFYSSGALLAHYVPIVANDPRGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTV
EEECHHHHCCCCEEHEEEEEEECCCCCCEEEEEECCCCCCCEEEHHHHHHCCCEECCCEE
LIDRVRVPRTHLVPAWKGYERPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTRTRPWV
EEEEECCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DSQRDTAAEDPYTIHAVGDLQIRLHASEALLERAGRAIDRALAAPDADTVAAAQIAVAEA
CCCCCCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KVLSTEIALQAANKLFELGGTRSTLGQYHLDRHWRNARTHTLHDPVRWKYAIVGNYHLNG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECC
VRPPFHAWS
CCCCCCCCC
>Mature Secondary Structure 
SAVLQNPSTEQPVRPHALQAAHRPGQPVPGLPRPPAPAHVVRDDAEAIAIAHGLAERFR
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH
EGAALRDRDRLWPVEEIDAYSQSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQ
CCCCCCCHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
ITQNHLGIAAAIRTVSDEAQQRLLFGEILGGARFGNAFSESGSRRAADFETRFIEDGDHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHEECCCCEE
VVTGRKFYSSGALLAHYVPIVANDPRGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTV
EEECHHHHCCCCEEHEEEEEEECCCCCCEEEEEECCCCCCCEEEHHHHHHCCCEECCCEE
LIDRVRVPRTHLVPAWKGYERPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTRTRPWV
EEEEECCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DSQRDTAAEDPYTIHAVGDLQIRLHASEALLERAGRAIDRALAAPDADTVAAAQIAVAEA
CCCCCCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KVLSTEIALQAANKLFELGGTRSTLGQYHLDRHWRNARTHTLHDPVRWKYAIVGNYHLNG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECC
VRPPFHAWS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]