Click here to switch to the map view.

The map label for this gene is yraN [C]

Identifier: 120609330

GI number: 120609330

Start: 681024

End: 681431

Strand: Direct

Name: yraN [C]

Synonym: Aave_0630

Alternate gene names: 120609330

Gene position: 681024-681431 (Clockwise)

Preceding gene: 120609328

Following gene: 120609331

Centisome position: 12.72

GC content: 74.02

Gene sequence:

>408_bases
ATGGGAATCCTTGAAAAAAAGACGGCCGGCCCGGGAGGGGCCGCGCGGAAGACTACGACGCGGGCCGCGGGCATGGCCGC
GGAGGACCGGGCGCTGGCGCATCTGCAGGCGGCCGGCCTGCGGCTGCTGGCGCGCAATTATCGGACGCCGGGCCGCGGAG
GCGGGGAGATCGACCTGATCCTGCGCGACCGCGACGGCACGCTGGTCTTCGTGGAGGTGCGCAGCCGGGCGAGCGATGCC
TATGGCGGCGCGGGCGCGAGCATCGGCGCGGCCAAGCGGCGGCGGATCGTGTTCGCGGCGCGGCACTACCTGCTGCGCTG
GCCGTCGCCGCCGCCATGCCGCTTCGATGCGGTGCTGGTGAGCGGCGACGCGGTGCAGTGGCTGCAGGCCGCGTTCGATG
CCGGCTAG

Upstream 100 bases:

>100_bases
CCGATCGGCGTGGCGACGACGTACAGGGCGCCTTGCGGATAATGCTGCGCTGCGGCCGCGTCGCGCGCGGCGGACAGGGC
GGAGGCGAAAGAGGCGCTCA

Downstream 100 bases:

>100_bases
CGCGGCGGTCGCCTGCCGCGCCAACGCCTTGCTACCGAAGCGGCAACACCCGGGGGGTATCATCGGCGTACATGCTCGAG
CAACGCATCCAACAGCATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MGILEKKTAGPGGAARKTTTRAAGMAAEDRALAHLQAAGLRLLARNYRTPGRGGGEIDLILRDRDGTLVFVEVRSRASDA
YGGAGASIGAAKRRRIVFAARHYLLRWPSPPPCRFDAVLVSGDAVQWLQAAFDAG

Sequences:

>Translated_135_residues
MGILEKKTAGPGGAARKTTTRAAGMAAEDRALAHLQAAGLRLLARNYRTPGRGGGEIDLILRDRDGTLVFVEVRSRASDA
YGGAGASIGAAKRRRIVFAARHYLLRWPSPPPCRFDAVLVSGDAVQWLQAAFDAG
>Mature_134_residues
GILEKKTAGPGGAARKTTTRAAGMAAEDRALAHLQAAGLRLLARNYRTPGRGGGEIDLILRDRDGTLVFVEVRSRASDAY
GGAGASIGAAKRRRIVFAARHYLLRWPSPPPCRFDAVLVSGDAVQWLQAAFDAG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=124, Percent_Identity=41.1290322580645, Blast_Score=83, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y630_ACIAC (A1TJU6)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_969008.1
- ProteinModelPortal:   A1TJU6
- STRING:   A1TJU6
- GeneID:   4667649
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_0630
- NMPDR:   fig|397945.5.peg.546
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   RNYRTPG
- PhylomeDB:   A1TJU6
- ProtClustDB:   PRK14673
- BioCyc:   AAVE397945:AAVE_0630-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14315; Mature: 14183

Theoretical pI: Translated: 11.33; Mature: 11.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGILEKKTAGPGGAARKTTTRAAGMAAEDRALAHLQAAGLRLLARNYRTPGRGGGEIDLI
CCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
LRDRDGTLVFVEVRSRASDAYGGAGASIGAAKRRRIVFAARHYLLRWPSPPPCRFDAVLV
EECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHEEECHHEEECCCCCCCCEEEEEE
SGDAVQWLQAAFDAG
ECCHHHHHHHHHCCC
>Mature Secondary Structure 
GILEKKTAGPGGAARKTTTRAAGMAAEDRALAHLQAAGLRLLARNYRTPGRGGGEIDLI
CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
LRDRDGTLVFVEVRSRASDAYGGAGASIGAAKRRRIVFAARHYLLRWPSPPPCRFDAVLV
EECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHEEECHHEEECCCCCCCCEEEEEE
SGDAVQWLQAAFDAG
ECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA