Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is sam [H]
Identifier: 120609271
GI number: 120609271
Start: 618778
End: 619722
Strand: Direct
Name: sam [H]
Synonym: Aave_0570
Alternate gene names: 120609271
Gene position: 618778-619722 (Clockwise)
Preceding gene: 120609270
Following gene: 120609273
Centisome position: 11.56
GC content: 67.72
Gene sequence:
>945_bases GTGTCCCCGGGAACGTCAGCGCCGGCTGTGCGCCCGGATGACCCGCGGCGGGCGACATTGCGCGCCACCGCGTACAAGCT CGCCTCCGCACTGGTGTTGGCGTGCATGTTCGCACTCATCAAGTCGCTCGGCAGCCGCTACCCCATCGGGGAAATCGTCT TCGCCCGCAGCGCTTTCGCCCTGCTGCCGATCATCGTCGCCCTGCACGCCAGCAGCCAGTGGAGCACGCTGCGCACCTCT CGTCCGCTCGCTCATCTGCGCCGATCGGTCGCGGGCGTCGCATCGCTGTTCCTGAGCTTCGGCGCGGTCTCGCTGTTGCC GTTGTCCACCGCCACTGCGCTCACATACTCGGCGCCACTGTTCATCACGCTGCTGTCGATCGTCTTGCTCGGTGAGCAGG TCACGCTTGGCCGGTGGGCCGCTGTCCTGATCGGGTTCGTGGGCATGCTGATGGTGATCCAGCCTGACCTGGAGGCGGGA TTGCCCTTGGGCAAGGTTTTGGGTGTGCTGGCCGCCGTCGCGACCGCGGTGGCACTGGTCGCCATCCGGCAGATGGCTGC CTCGGAATCGGCGCTCGCGATCGCGTTCTACTTCACTCTCTTCGGCACGTTGGTGGGCGCTGCAACCCTGCCACTGCAGG CAGTGGTTCCCGACGGCGCCGATGCCTTGCGGCTGGTGTCCGTGGGGGTGCTCGGCGGGATGGCGCAGTTGCTGCTCACC ATGGCCTACCGGCTGGCACCGGCCTCGGTGCTCGCGCCCTACGAATACGCCACGCTGGTGGGCGCGATCCTGGTGGGATT CATCGTTTGGGGCGAAATGCCTGGGCCCGTCGAATGGCTCGGGATCGTTGTCATCGTCGGCGCCAACGTCGGCATGACGG CGCATGAGCAGGCCCGGGCGCGGCGTGCGCGCCGTGGTCCGGCATCCGATGGGACGGACGAATGA
Upstream 100 bases:
>100_bases GCCGGACGAGGACAGTGCGCTGCGGCGGCTTGGACTGGCCGGGCTCGACCGGCGGGGCATCCTTGCCGCCGTAGCCGCGG GCTGAGCGCGGGGGCATGCC
Downstream 100 bases:
>100_bases AAGTACGAGCGGTTCGATCTTCGGTGAGGTCTTACCGCAGCGCACGCTCAGCCTTGCGCCATGCGCTGGCTGAGCAGGTC CGCGAACTCGACCACCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSPGTSAPAVRPDDPRRATLRATAYKLASALVLACMFALIKSLGSRYPIGEIVFARSAFALLPIIVALHASSQWSTLRTS RPLAHLRRSVAGVASLFLSFGAVSLLPLSTATALTYSAPLFITLLSIVLLGEQVTLGRWAAVLIGFVGMLMVIQPDLEAG LPLGKVLGVLAAVATAVALVAIRQMAASESALAIAFYFTLFGTLVGAATLPLQAVVPDGADALRLVSVGVLGGMAQLLLT MAYRLAPASVLAPYEYATLVGAILVGFIVWGEMPGPVEWLGIVVIVGANVGMTAHEQARARRARRGPASDGTDE
Sequences:
>Translated_314_residues MSPGTSAPAVRPDDPRRATLRATAYKLASALVLACMFALIKSLGSRYPIGEIVFARSAFALLPIIVALHASSQWSTLRTS RPLAHLRRSVAGVASLFLSFGAVSLLPLSTATALTYSAPLFITLLSIVLLGEQVTLGRWAAVLIGFVGMLMVIQPDLEAG LPLGKVLGVLAAVATAVALVAIRQMAASESALAIAFYFTLFGTLVGAATLPLQAVVPDGADALRLVSVGVLGGMAQLLLT MAYRLAPASVLAPYEYATLVGAILVGFIVWGEMPGPVEWLGIVVIVGANVGMTAHEQARARRARRGPASDGTDE >Mature_313_residues SPGTSAPAVRPDDPRRATLRATAYKLASALVLACMFALIKSLGSRYPIGEIVFARSAFALLPIIVALHASSQWSTLRTSR PLAHLRRSVAGVASLFLSFGAVSLLPLSTATALTYSAPLFITLLSIVLLGEQVTLGRWAAVLIGFVGMLMVIQPDLEAGL PLGKVLGVLAAVATAVALVAIRQMAASESALAIAFYFTLFGTLVGAATLPLQAVVPDGADALRLVSVGVLGGMAQLLLTM AYRLAPASVLAPYEYATLVGAILVGFIVWGEMPGPVEWLGIVVIVGANVGMTAHEQARARRARRGPASDGTDE
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32643; Mature: 32512
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPGTSAPAVRPDDPRRATLRATAYKLASALVLACMFALIKSLGSRYPIGEIVFARSAFA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LLPIIVALHASSQWSTLRTSRPLAHLRRSVAGVASLFLSFGAVSLLPLSTATALTYSAPL HHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FITLLSIVLLGEQVTLGRWAAVLIGFVGMLMVIQPDLEAGLPLGKVLGVLAAVATAVALV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHH AIRQMAASESALAIAFYFTLFGTLVGAATLPLQAVVPDGADALRLVSVGVLGGMAQLLLT HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHH MAYRLAPASVLAPYEYATLVGAILVGFIVWGEMPGPVEWLGIVVIVGANVGMTAHEQARA HHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCCCHHHHHHH RRARRGPASDGTDE HHHHCCCCCCCCCC >Mature Secondary Structure SPGTSAPAVRPDDPRRATLRATAYKLASALVLACMFALIKSLGSRYPIGEIVFARSAFA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LLPIIVALHASSQWSTLRTSRPLAHLRRSVAGVASLFLSFGAVSLLPLSTATALTYSAPL HHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FITLLSIVLLGEQVTLGRWAAVLIGFVGMLMVIQPDLEAGLPLGKVLGVLAAVATAVALV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHH AIRQMAASESALAIAFYFTLFGTLVGAATLPLQAVVPDGADALRLVSVGVLGGMAQLLLT HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHH MAYRLAPASVLAPYEYATLVGAILVGFIVWGEMPGPVEWLGIVVIVGANVGMTAHEQARA HHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCCCHHHHHHH RRARRGPASDGTDE HHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]