Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
---|---|
Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is lafL [H]
Identifier: 120597320
GI number: 120597320
Start: 529652
End: 530119
Strand: Direct
Name: lafL [H]
Synonym: Sputw3181_0489
Alternate gene names: 120597320
Gene position: 529652-530119 (Clockwise)
Preceding gene: 120597319
Following gene: 120597321
Centisome position: 11.25
GC content: 39.53
Gene sequence:
>468_bases ATGGCAATTGTAAAATCGCGTGTAATAAAAATTACCCTAGCATTTTTTGTACTCATTAGCTGGACTGCTGGGGCGTTATG GATTGGGATAAATGGTGCCGATTGGAAGTTAACAGAGCTTTTTGCCTCTGAACCTGAAGTCGAACCTGTGCCTGTGGCAA AGTTTTACCCATTAGAAAAGTTTGTGATATCGATACCAGGGGATAAATATCCCCATTACATGCTGCTTGAAATGTCATTG AAAAGTTACAATCCCGATATGAAAACAGTGTTAGTTGAGGCCGATCCCCTCATTCGTAACGCCATGATGAAAATGTTTTC ACGTAAAACATTTGAACAGTTAAATCATTTGGATCAGCTCGATGGTTTGCAGGCTGAAGCCCTTATTTTGATGGTGAAAG TGCTATCTGATAACAAATTGCCATCAGATATTGATGAAGTACTTTTTACCCGTATGGTGATCCAGTAA
Upstream 100 bases:
>100_bases TTCATCGATAGCACCTGAAACCGCAATGGAAAATGGCGCCGATGTGATGACCAGAGAGAAATCTCAATTAGATTTATTGG CTTAATGCCGGAGTTGTTTA
Downstream 100 bases:
>100_bases GGGGCCGATATGACGACAGATGGCCAACTTGCATATCAACAAACCTGTGATTATCCAATCGAAGAACGGCAATCTGAACA ACAGGTTATTCGGCAATATT
Product: flagellar basal body-associated protein FliL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MAIVKSRVIKITLAFFVLISWTAGALWIGINGADWKLTELFASEPEVEPVPVAKFYPLEKFVISIPGDKYPHYMLLEMSL KSYNPDMKTVLVEADPLIRNAMMKMFSRKTFEQLNHLDQLDGLQAEALILMVKVLSDNKLPSDIDEVLFTRMVIQ
Sequences:
>Translated_155_residues MAIVKSRVIKITLAFFVLISWTAGALWIGINGADWKLTELFASEPEVEPVPVAKFYPLEKFVISIPGDKYPHYMLLEMSL KSYNPDMKTVLVEADPLIRNAMMKMFSRKTFEQLNHLDQLDGLQAEALILMVKVLSDNKLPSDIDEVLFTRMVIQ >Mature_154_residues AIVKSRVIKITLAFFVLISWTAGALWIGINGADWKLTELFASEPEVEPVPVAKFYPLEKFVISIPGDKYPHYMLLEMSLK SYNPDMKTVLVEADPLIRNAMMKMFSRKTFEQLNHLDQLDGLQAEALILMVKVLSDNKLPSDIDEVLFTRMVIQ
Specific function: Controls the rotational direction of flagella during chemotaxis [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FliL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005503 [H]
Pfam domain/function: PF03748 FliL [H]
EC number: NA
Molecular weight: Translated: 17676; Mature: 17545
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIVKSRVIKITLAFFVLISWTAGALWIGINGADWKLTELFASEPEVEPVPVAKFYPLEK CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHCCHHH FVISIPGDKYPHYMLLEMSLKSYNPDMKTVLVEADPLIRNAMMKMFSRKTFEQLNHLDQL EEEECCCCCCCCEEEEEEEHHHCCCCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH DGLQAEALILMVKVLSDNKLPSDIDEVLFTRMVIQ CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure AIVKSRVIKITLAFFVLISWTAGALWIGINGADWKLTELFASEPEVEPVPVAKFYPLEK CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHCCHHH FVISIPGDKYPHYMLLEMSLKSYNPDMKTVLVEADPLIRNAMMKMFSRKTFEQLNHLDQL EEEECCCCCCCCEEEEEEEHHHCCCCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH DGLQAEALILMVKVLSDNKLPSDIDEVLFTRMVIQ CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12620739; 8501040 [H]