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The map label for this gene is rbn [C]

Identifier: 119947084

GI number: 119947084

Start: 4307439

End: 4308317

Strand: Reverse

Name: rbn [C]

Synonym: Ping_3482

Alternate gene names: 119947084

Gene position: 4308317-4307439 (Counterclockwise)

Preceding gene: 119947085

Following gene: 119947083

Centisome position: 94.49

GC content: 40.16

Gene sequence:

>879_bases
ATGAAATTTGGTAGAAAAATTGTGATGGACAAAGTTAAAGTTACCTACCAATACTTGCTCTTTGTATGGCGGCGGAGTGA
ACAGGATAATATTAAGGTGCCGGCGGGGCATCTGGCCTATGTGACTTTATTATCTATCGTGCCCTTACTGGCCGTTATTT
TCTATATGTTAGCGGCTTTTCCAGTTTTTTCTGATCTGAAGGGAATGTTAGAAGATCTTATTTATAACAATCTGCTGCCC
ACATCTGGAGATACGATTCAGGAGCATATCAGCGGCTTTATTGAAAATACTAAAAAAATGAGCATGATGGGGATTGGCTC
ATTGATAGCGATTGCATTATTATTGATATCTACGATAGATCAAACCATTAACCGCATCTGGCGTTGCACTAATAAACGTT
CCCGAATCCAGTCCTTTACTATTTATTGGACTATTTTAAGCTTGGGTCCGGTGATTATCGGCGCGAGTCTGGCATTAAGC
TCTTACCTTTTTAGTGTTTTTCAAGAACATGGCTCTCTGTCATTTGGCCAACGACTATTGAGCTTAATGCCTTTTATTTT
AACCTGGTTAACCTTTGCCGGTGTTTATACGCTTGTGCCTCATCAGCGAGTCAGTTTTCGTTATGCATTAATAGGTGGTT
TGATTGCGGCTATTCTGTTTTTCTTCGGCACCGATCTTTTCCGCTTATATATTACTAATTTCCCCTCGCAGCAGATAATA
TACGGTGCGCTGGCAGTGATCCCAATTCTCTTTGTGTGGATCTATTACAGTTGGTTAATTGTTTTAATCGGTGCTGAAGT
CACTGCGACATTAGAAGAGTTTTTAAAGCAGCAGGAAGACAACAATGTGACTAAAGAATATTTGGGAGCGGACATATGA

Upstream 100 bases:

>100_bases
AAATGGGTAAGGCTAACAGCTAACAGCTAACAGCTATCAGTCATTAGCGGTCAGTCGTCAGCAGTAGGTAGTAAGGTGTA
AGACTCTAAGGATAATAGTG

Downstream 100 bases:

>100_bases
TAGCCCTTATACAGCGTGTTAGTGACGCCAGAGTTACCGTTGCCGGAGAAAATATTGGTCAAATAGGGCCTGGGTTACTG
GTTTTATTAGGCGTTGAAAA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKFGRKIVMDKVKVTYQYLLFVWRRSEQDNIKVPAGHLAYVTLLSIVPLLAVIFYMLAAFPVFSDLKGMLEDLIYNNLLP
TSGDTIQEHISGFIENTKKMSMMGIGSLIAIALLLISTIDQTINRIWRCTNKRSRIQSFTIYWTILSLGPVIIGASLALS
SYLFSVFQEHGSLSFGQRLLSLMPFILTWLTFAGVYTLVPHQRVSFRYALIGGLIAAILFFFGTDLFRLYITNFPSQQII
YGALAVIPILFVWIYYSWLIVLIGAEVTATLEEFLKQQEDNNVTKEYLGADI

Sequences:

>Translated_292_residues
MKFGRKIVMDKVKVTYQYLLFVWRRSEQDNIKVPAGHLAYVTLLSIVPLLAVIFYMLAAFPVFSDLKGMLEDLIYNNLLP
TSGDTIQEHISGFIENTKKMSMMGIGSLIAIALLLISTIDQTINRIWRCTNKRSRIQSFTIYWTILSLGPVIIGASLALS
SYLFSVFQEHGSLSFGQRLLSLMPFILTWLTFAGVYTLVPHQRVSFRYALIGGLIAAILFFFGTDLFRLYITNFPSQQII
YGALAVIPILFVWIYYSWLIVLIGAEVTATLEEFLKQQEDNNVTKEYLGADI
>Mature_292_residues
MKFGRKIVMDKVKVTYQYLLFVWRRSEQDNIKVPAGHLAYVTLLSIVPLLAVIFYMLAAFPVFSDLKGMLEDLIYNNLLP
TSGDTIQEHISGFIENTKKMSMMGIGSLIAIALLLISTIDQTINRIWRCTNKRSRIQSFTIYWTILSLGPVIIGASLALS
SYLFSVFQEHGSLSFGQRLLSLMPFILTWLTFAGVYTLVPHQRVSFRYALIGGLIAAILFFFGTDLFRLYITNFPSQQII
YGALAVIPILFVWIYYSWLIVLIGAEVTATLEEFLKQQEDNNVTKEYLGADI

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=287, Percent_Identity=46.6898954703833, Blast_Score=264, Evalue=6e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3482_PSYIN (A1T0A0)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944764.1
- STRING:   A1T0A0
- GeneID:   4625555
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3482
- HOGENOM:   HBG451793
- OMA:   FLWIYIS
- PhylomeDB:   A1T0A0
- ProtClustDB:   PRK01637
- BioCyc:   PING357804:PING_3482-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33171; Mature: 33171

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1a9599cc)-; HASH(0x1b3710a0)-; HASH(0x1a90f5dc)-; HASH(0x1afa0124)-; HASH(0x171ee52c)-; HASH(0x1b04d9e8)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA