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The map label for this gene is ygaD [H]

Identifier: 119946987

GI number: 119946987

Start: 4178147

End: 4178644

Strand: Reverse

Name: ygaD [H]

Synonym: Ping_3382

Alternate gene names: 119946987

Gene position: 4178644-4178147 (Counterclockwise)

Preceding gene: 119946989

Following gene: 119946986

Centisome position: 91.65

GC content: 47.59

Gene sequence:

>498_bases
ATGTTCACTGAAAGAACCGTTCAAGAATTAGCGCAAGTCCTAGGCGACAAACTCAACCAGGCTGGGTTCGTTGTCACGAC
CGCAGAATCCTGTACCGGTGGTGGTGTAGCATACGCTATTACTGAGATTTCTGGAAGTTCACAGTGGTTTGACCGAGGTT
TTGTGACCTATAGCGATCAAGCGAAAATACAGATGTTAGGCGTCGAAAAATCGGTGATTAAAGGCTTTGGCGCAGTTTCT
GAGCAGGTGGTTGAAGCAATGGCTGTTGGTGCGGTAACCCATTCTGATGCGGATATCGCGGTGGCCATTAGTGGGATTGC
AGGGCCTGAAGGTGGCAGCGATGAAAAACCCGTTGGCACTGTGTGCATCTCTTGGTATAACGTTCATTCGACCAGTAAAA
CTGAAACATATTTATTTACCGGCGACCGTTCTGAAGTTCGAACGCAGGCGATACGCCTCGCATTACTTGGTTTAATTGAG
GCCATTGATATAGAATGA

Upstream 100 bases:

>100_bases
TAGCGTCATAATGAATACACTTAATAGATGATAACTTTATATAATAAGAACACTTGAATTTACATTTCCAATTGTATTGG
ATCTTTATTGGAGAAAACTT

Downstream 100 bases:

>100_bases
TTAGGCGAATACACTGATTACACTGGACGGATGATAAAAACATAAAAAGCACTTGATACTGTGTAAATCAACAGTATACT
TAGTCCCAAATACTGAGTGC

Product: competence-damaged protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MFTERTVQELAQVLGDKLNQAGFVVTTAESCTGGGVAYAITEISGSSQWFDRGFVTYSDQAKIQMLGVEKSVIKGFGAVS
EQVVEAMAVGAVTHSDADIAVAISGIAGPEGGSDEKPVGTVCISWYNVHSTSKTETYLFTGDRSEVRTQAIRLALLGLIE
AIDIE

Sequences:

>Translated_165_residues
MFTERTVQELAQVLGDKLNQAGFVVTTAESCTGGGVAYAITEISGSSQWFDRGFVTYSDQAKIQMLGVEKSVIKGFGAVS
EQVVEAMAVGAVTHSDADIAVAISGIAGPEGGSDEKPVGTVCISWYNVHSTSKTETYLFTGDRSEVRTQAIRLALLGLIE
AIDIE
>Mature_165_residues
MFTERTVQELAQVLGDKLNQAGFVVTTAESCTGGGVAYAITEISGSSQWFDRGFVTYSDQAKIQMLGVEKSVIKGFGAVS
EQVVEAMAVGAVTHSDADIAVAISGIAGPEGGSDEKPVGTVCISWYNVHSTSKTETYLFTGDRSEVRTQAIRLALLGLIE
AIDIE

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=159, Percent_Identity=51.5723270440252, Blast_Score=153, Evalue=4e-39,
Organism=Escherichia coli, GI1787818, Length=148, Percent_Identity=39.1891891891892, Blast_Score=113, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17428; Mature: 17428

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTERTVQELAQVLGDKLNQAGFVVTTAESCTGGGVAYAITEISGSSQWFDRGFVTYSDQ
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHCCCEEECCC
AKIQMLGVEKSVIKGFGAVSEQVVEAMAVGAVTHSDADIAVAISGIAGPEGGSDEKPVGT
CEEEEECCCHHHHHHCCHHHHHHHHHHHHHCEECCCCCEEEEEECCCCCCCCCCCCCCEE
VCISWYNVHSTSKTETYLFTGDRSEVRTQAIRLALLGLIEAIDIE
EEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFTERTVQELAQVLGDKLNQAGFVVTTAESCTGGGVAYAITEISGSSQWFDRGFVTYSDQ
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHCCCEEECCC
AKIQMLGVEKSVIKGFGAVSEQVVEAMAVGAVTHSDADIAVAISGIAGPEGGSDEKPVGT
CEEEEECCCHHHHHHCCHHHHHHHHHHHHHCEECCCCCEEEEEECCCCCCCCCCCCCCEE
VCISWYNVHSTSKTETYLFTGDRSEVRTQAIRLALLGLIEAIDIE
EEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]