Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946926
Identifier: 119946926
GI number: 119946926
Start: 4103468
End: 4104151
Strand: Reverse
Name: 119946926
Synonym: Ping_3320
Alternate gene names: NA
Gene position: 4104151-4103468 (Counterclockwise)
Preceding gene: 119946927
Following gene: 119946924
Centisome position: 90.01
GC content: 45.91
Gene sequence:
>684_bases ATGGCTTCCTGTACCTACTCTGTACCAAATATGAATACTTCTGGTGATAATCTTTATGGTCCGCATATTTGTTACCAGCC TTTTATTGATTACGCCTGGAACGTCTACGGGTTTAGTGGCAATAAGAATTATTGGGACGACGGCTTTGGCTGGCATGACC CTTGCAATAGTACTAAACCGTTGGCGCGTGCCTTTAACGCTTGCTGGTTGTTAACCTATTCAGCCAATGATTATACCAAC GACAGCTGGAGTTCACCGATCCTCAATTGGGGACGCCGATATGTGCGAAATAATATTGATGATCTTCGCGCTAAGTGTGG TGACGGCTCCGCGATAGCGGCTTCTTTTTCAGGATTTTTTGTTAACGATAGAGTGGAACTCTATCTTGGTTTTTTCTATT CAAAAGATGTACCCGGGCGTGCAGAAACGCTGTTACATGAGTCTCGCCATCAAGGTGGGAAGTCGCATAATGCAAATTTT CCATCGGGTTCAGTGTTTGGTTCTGGTAGCGGGGCAGACTCAAGCTGGGGTTATAATGGTGCATGGATGTACGGCGCTCT TTATTTGTGGTGGTTTTTTGCGGCGGGTGCGAGAACAACATCGGCTATGCGCCAAAGAGCACGTCAACGTGGTAACTTAG TCATTGATAATGCCTTTGCCAGTCATCCGGGATACAGTATTTAA
Upstream 100 bases:
>100_bases ATATCCCTGCACCAAAAAGTGACTCGTCAGCTAAACATTGTCGCGACTGATCTGTTTTTTGAAAAACGGTTAACATTAAA ACTAACTAAGGAGTAATACC
Downstream 100 bases:
>100_bases TCGTAAATCATTTGTAATTTTAGGCTGTTGATTTTCTAAAAGGCTGTTAAACCTATAAATCAGTCAAGGAAAGCCTCTTT ATCAGAGATCCATGCGTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MASCTYSVPNMNTSGDNLYGPHICYQPFIDYAWNVYGFSGNKNYWDDGFGWHDPCNSTKPLARAFNACWLLTYSANDYTN DSWSSPILNWGRRYVRNNIDDLRAKCGDGSAIAASFSGFFVNDRVELYLGFFYSKDVPGRAETLLHESRHQGGKSHNANF PSGSVFGSGSGADSSWGYNGAWMYGALYLWWFFAAGARTTSAMRQRARQRGNLVIDNAFASHPGYSI
Sequences:
>Translated_227_residues MASCTYSVPNMNTSGDNLYGPHICYQPFIDYAWNVYGFSGNKNYWDDGFGWHDPCNSTKPLARAFNACWLLTYSANDYTN DSWSSPILNWGRRYVRNNIDDLRAKCGDGSAIAASFSGFFVNDRVELYLGFFYSKDVPGRAETLLHESRHQGGKSHNANF PSGSVFGSGSGADSSWGYNGAWMYGALYLWWFFAAGARTTSAMRQRARQRGNLVIDNAFASHPGYSI >Mature_226_residues ASCTYSVPNMNTSGDNLYGPHICYQPFIDYAWNVYGFSGNKNYWDDGFGWHDPCNSTKPLARAFNACWLLTYSANDYTND SWSSPILNWGRRYVRNNIDDLRAKCGDGSAIAASFSGFFVNDRVELYLGFFYSKDVPGRAETLLHESRHQGGKSHNANFP SGSVFGSGSGADSSWGYNGAWMYGALYLWWFFAAGARTTSAMRQRARQRGNLVIDNAFASHPGYSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25364; Mature: 25233
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASCTYSVPNMNTSGDNLYGPHICYQPFIDYAWNVYGFSGNKNYWDDGFGWHDPCNSTKP CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCH LARAFNACWLLTYSANDYTNDSWSSPILNWGRRYVRNNIDDLRAKCGDGSAIAASFSGFF HHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCEE VNDRVELYLGFFYSKDVPGRAETLLHESRHQGGKSHNANFPSGSVFGSGSGADSSWGYNG ECCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCC AWMYGALYLWWFFAAGARTTSAMRQRARQRGNLVIDNAFASHPGYSI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCC >Mature Secondary Structure ASCTYSVPNMNTSGDNLYGPHICYQPFIDYAWNVYGFSGNKNYWDDGFGWHDPCNSTKP CCEEECCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCH LARAFNACWLLTYSANDYTNDSWSSPILNWGRRYVRNNIDDLRAKCGDGSAIAASFSGFF HHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCEE VNDRVELYLGFFYSKDVPGRAETLLHESRHQGGKSHNANFPSGSVFGSGSGADSSWGYNG ECCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCC AWMYGALYLWWFFAAGARTTSAMRQRARQRGNLVIDNAFASHPGYSI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA