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The map label for this gene is xerD [H]

Identifier: 119946910

GI number: 119946910

Start: 4075113

End: 4076009

Strand: Reverse

Name: xerD [H]

Synonym: Ping_3304

Alternate gene names: 119946910

Gene position: 4076009-4075113 (Counterclockwise)

Preceding gene: 119946916

Following gene: 119946909

Centisome position: 89.39

GC content: 42.47

Gene sequence:

>897_bases
ATGGAAGCATTAAGCATCGATCAATTTTTAGATTCATTATGGTTAGAGAGGGGATTGTCACAAAATACCTTAGAATCATA
TCGCCACGATTTACGTTTGGTTGAAATTTTTCTTGCCACAAGATTGGTTAGTTTATGCTCTGCCTCGTCGTTAGATTTAA
TTGATTATTTTAGTTGTCGTCTGAGCGGAGAGAAAGAATATAAAAATGCATCAACTGCGCGTTTAATGAGTGCCTTACGC
CGTTATTATCAATATTTATGCCGCGAAAAAATACGCGAGGATGATCCCAGTGCTAAGCTGGAAAGCCCTAAAATAATCAA
ACCCTTACCTAAGTCACTTTCAGAATCCGAAGTTGACGGATTATTATCCTCACCAGATTTAACCGACAGTGTTCAATTTC
GAGATAAAGCCATGCTTGAGCTTCTCTACGCGACGGGTTTGCGCGTTTCCGAGTTAGTTGGATTGTCGATGGAGGAGATC
AATTTAAAACAAGGTGTTGTGCGCGTTACCGGGAAGGGTGATAAAACGCGTTTGGTACCATTAGGAGAAGAGGCCATCTA
CTGGGTTGAGCGTTATATAGAGGAAGCGCGGCCAGATCTGTTAAAGGGTCAAAGCAGCGACGTGTTATTTCCAAGCCGTC
GCGCAACGGTGATGGTGAGACAAACATTTTGGCATCGCATTAAATTTTATGCCCAATTATGCGGCATAGATAAAGAAGCG
TTATCCCCGCATGTATTGCGTCATGCCTTTGCAACACACTTATTAAATTATGGGGCAGATCTGCGTGTGGTGCAGATGCT
ATTGGGGCATAGTAATCTTTCTACAACGCAGATTTACACGCATATTGCACAAGACAGATTGAAAGAGCTGCATCAGGAGC
ATCATCCAAGGGCATAA

Upstream 100 bases:

>100_bases
TTTCTGTATAACAAGTACTAGAACCATAAAATAATCCGATTTTCATATATAACGCCCGATAGACTAAAAACGGTGTTAAT
TTACAGATAAGGGAGTCTTA

Downstream 100 bases:

>100_bases
CGCAGCTATTTCTGATAACACGCAAAAACACGGTCTAGTATTTATTGATGGCAAATTAAAAAATTCACAAATCAGTACTT
ACTAGGCATAATCAACTCCT

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MEALSIDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCRLSGEKEYKNASTARLMSALR
RYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEI
NLKQGVVRVTGKGDKTRLVPLGEEAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEA
LSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA

Sequences:

>Translated_298_residues
MEALSIDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCRLSGEKEYKNASTARLMSALR
RYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEI
NLKQGVVRVTGKGDKTRLVPLGEEAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEA
LSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA
>Mature_298_residues
MEALSIDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCRLSGEKEYKNASTARLMSALR
RYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEI
NLKQGVVRVTGKGDKTRLVPLGEEAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEA
LSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerC binding sites by a short central region, forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=65.8703071672355, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI1790244, Length=293, Percent_Identity=36.1774744027304, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1790768, Length=174, Percent_Identity=29.8850574712644, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34167; Mature: 34167

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALSIDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCR
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LSGEKEYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDG
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHH
LLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRLVP
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHCCEEEEECCCCCEEEEE
LGEEAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEA
CCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
LSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEALSIDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCR
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LSGEKEYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDG
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHH
LLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRLVP
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHCCEEEEECCCCCEEEEE
LGEEAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEA
CCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
LSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9675854 [H]