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The map label for this gene is yjeK [H]

Identifier: 119946889

GI number: 119946889

Start: 4048871

End: 4049884

Strand: Direct

Name: yjeK [H]

Synonym: Ping_3283

Alternate gene names: 119946889

Gene position: 4048871-4049884 (Clockwise)

Preceding gene: 119946887

Following gene: 119946890

Centisome position: 88.8

GC content: 37.48

Gene sequence:

>1014_bases
ATGCTGCAAATAATTACCACGGATAATACCGATGTGTTGCCGAGTTGGCAAAAAGAACTCGCGAATACGGTCAAAAATCC
ACAACAACTGTTACAATTATTGGATATATCCCCAGAAAATGTACCGTTAAGCTTAAAAGCCCGTAAAAGCTTCTCTATGC
TGGTACCGATGCCGTTTGTTAAAAAAATGAAAAAAGGGGATATTAATGACCCTTTATTACAACAGGTTTTACCTATAGAA
GATGAAGAATTAGTCTCTGAAGGTTACAGTACAGATCCTTTAGAAGAGCATAACAGTGCCCTTCCCGGTTTATTACACAA
ATACCAAAGCCGCGTATTACTGATCTTAAAATCGGGTTGTGCGATTAATTGCCGTTACTGTTTTAGGCGACATTTCCCTT
ATCAGGATAATAATATTAACAAAAAACAGTTACAGGAAATTATCACTTACATCAAATCCCATCCTGAAGTAAATGAAGTT
ATATTAAGCGGTGGTGATCCATTAATGAGTAAAGATGATTTTTTGCAACACGTGATCAATGAATTGGAGTTATTACCACA
ATTGAGACGATTAAGACTGCATAGTCGTCTACCGGTTGTGATTCCATCTCGAATCACTGACCAACTATGTCATATGTTTA
ATAAAAGTCGTTTAAATGTGGTCTTTGTATTACATATCAACCATGCTAATGAGATCGATCAAATATTTAAAGATGCAATG
AATAAACTCCATCAGGCTGGCGTGCAGTTATTAAATCAAAGTGTATTACTAAAAGGCATAAACGATAACAGTCAGGCACT
GGTTGACCTTAGCGAAGCGCTTTTTGAGGCGCATATACTGCCTTATTACCTGTTTTTATTAGATAAGGTGCAGGGCGCAC
AACATTTTGATTTACCCGAGCAGCGTGCGATACAATTAACCCAAGAAATGAGCGCTGCATTACCAGGTTATTTAGTGCCA
AGATTAAGTCGGGAAATTGCGGGTGAAAAGAACAAAACACTGATAGCGACATAA

Upstream 100 bases:

>100_bases
TGCACAAGGCTCGTTATCAAGCATAAATTTTAGCCCGCCTTTGAATTCACTGGTATTATACGTTCCCATCATTACCTCAC
TATAAATTGATTTATAAAAT

Downstream 100 bases:

>100_bases
AATCAAACCAGATGCAGAGTCTGATTCAACCTTAGGTTAAGCATAGAGTACTGCTTAACCTCTGAGGGCTGTAACGATGA
TAGAATAAGTACGAACAAAG

Product: lysine 2,3-aminomutase YodO family protein

Products: (3S)-3,6-diaminohexanoate

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLQIITTDNTDVLPSWQKELANTVKNPQQLLQLLDISPENVPLSLKARKSFSMLVPMPFVKKMKKGDINDPLLQQVLPIE
DEELVSEGYSTDPLEEHNSALPGLLHKYQSRVLLILKSGCAINCRYCFRRHFPYQDNNINKKQLQEIITYIKSHPEVNEV
ILSGGDPLMSKDDFLQHVINELELLPQLRRLRLHSRLPVVIPSRITDQLCHMFNKSRLNVVFVLHINHANEIDQIFKDAM
NKLHQAGVQLLNQSVLLKGINDNSQALVDLSEALFEAHILPYYLFLLDKVQGAQHFDLPEQRAIQLTQEMSAALPGYLVP
RLSREIAGEKNKTLIAT

Sequences:

>Translated_337_residues
MLQIITTDNTDVLPSWQKELANTVKNPQQLLQLLDISPENVPLSLKARKSFSMLVPMPFVKKMKKGDINDPLLQQVLPIE
DEELVSEGYSTDPLEEHNSALPGLLHKYQSRVLLILKSGCAINCRYCFRRHFPYQDNNINKKQLQEIITYIKSHPEVNEV
ILSGGDPLMSKDDFLQHVINELELLPQLRRLRLHSRLPVVIPSRITDQLCHMFNKSRLNVVFVLHINHANEIDQIFKDAM
NKLHQAGVQLLNQSVLLKGINDNSQALVDLSEALFEAHILPYYLFLLDKVQGAQHFDLPEQRAIQLTQEMSAALPGYLVP
RLSREIAGEKNKTLIAT
>Mature_337_residues
MLQIITTDNTDVLPSWQKELANTVKNPQQLLQLLDISPENVPLSLKARKSFSMLVPMPFVKKMKKGDINDPLLQQVLPIE
DEELVSEGYSTDPLEEHNSALPGLLHKYQSRVLLILKSGCAINCRYCFRRHFPYQDNNINKKQLQEIITYIKSHPEVNEV
ILSGGDPLMSKDDFLQHVINELELLPQLRRLRLHSRLPVVIPSRITDQLCHMFNKSRLNVVFVLHINHANEIDQIFKDAM
NKLHQAGVQLLNQSVLLKGINDNSQALVDLSEALFEAHILPYYLFLLDKVQGAQHFDLPEQRAIQLTQEMSAALPGYLVP
RLSREIAGEKNKTLIAT

Specific function: With YjeA might be involved in the post-translational modification of elongation factor P (EF-P) [H]

COG id: COG1509

COG function: function code E; Lysine 2,3-aminomutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the KamA family [H]

Homologues:

Organism=Escherichia coli, GI1790589, Length=330, Percent_Identity=52.7272727272727, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003739
- InterPro:   IPR022462
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: 5.4.3.2

Molecular weight: Translated: 38469; Mature: 38469

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIITTDNTDVLPSWQKELANTVKNPQQLLQLLDISPENVPLSLKARKSFSMLVPMPFV
CEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCEECCCHHH
KKMKKGDINDPLLQQVLPIEDEELVSEGYSTDPLEEHNSALPGLLHKYQSRVLLILKSGC
HHHHCCCCCCHHHHHHCCCCHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHEEEEEECCC
AINCRYCFRRHFPYQDNNINKKQLQEIITYIKSHPEVNEVILSGGDPLMSKDDFLQHVIN
EEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHEECCCCCCCCHHHHHHHHHH
ELELLPQLRRLRLHSRLPVVIPSRITDQLCHMFNKSRLNVVFVLHINHANEIDQIFKDAM
HHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
NKLHQAGVQLLNQSVLLKGINDNSQALVDLSEALFEAHILPYYLFLLDKVQGAQHFDLPE
HHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QRAIQLTQEMSAALPGYLVPRLSREIAGEKNKTLIAT
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure
MLQIITTDNTDVLPSWQKELANTVKNPQQLLQLLDISPENVPLSLKARKSFSMLVPMPFV
CEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCEECCCHHH
KKMKKGDINDPLLQQVLPIEDEELVSEGYSTDPLEEHNSALPGLLHKYQSRVLLILKSGC
HHHHCCCCCCHHHHHHCCCCHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHEEEEEECCC
AINCRYCFRRHFPYQDNNINKKQLQEIITYIKSHPEVNEVILSGGDPLMSKDDFLQHVIN
EEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHEECCCCCCCCHHHHHHHHHH
ELELLPQLRRLRLHSRLPVVIPSRITDQLCHMFNKSRLNVVFVLHINHANEIDQIFKDAM
HHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
NKLHQAGVQLLNQSVLLKGINDNSQALVDLSEALFEAHILPYYLFLLDKVQGAQHFDLPE
HHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QRAIQLTQEMSAALPGYLVPRLSREIAGEKNKTLIAT
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-lysine

Specific reaction: L-lysine = (3S)-3,6-diaminohexanoate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]