Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is 119946857
Identifier: 119946857
GI number: 119946857
Start: 4014920
End: 4016344
Strand: Reverse
Name: 119946857
Synonym: Ping_3251
Alternate gene names: NA
Gene position: 4016344-4014920 (Counterclockwise)
Preceding gene: 119946858
Following gene: 119946856
Centisome position: 88.09
GC content: 46.74
Gene sequence:
>1425_bases ATGAAAAAGCACAAAGGTTTTGTACTGATACCCATACTTATAATTACTACTATTAGCGCTATGTTGGCATTTTCTCAACT CAGTGATAATCGTCTGCAGGAGCGGGTTGCGGGTAATCAGCAAAAAGAAATCAGTGCGCGGCTTGCTGCGGAAAAAGGTA TTTTTAAGGCTTTTAACGATATCAAAGTTCAAAGTGACCTCGGCCAGACAAATGATCAGATCATCAGTGCACTGATTGAC TCTGGAAAGGTTGATTTGTCTGCTCGGGAGTCTTATTCCTTTCCTTCAGATAATAATGGTGCCTCGCCTGAGGCAACAAT TATTACCTTGGTAAGTAAAGGCGAATTTAGCGGTGCGACTGCTTATTTAAAAGCGGTCATTAAAATCATTGATGGTCCTA GCGGCTTGGGAAAAACGGTCTCATACTGTTCTATTTATTATTACTACCCTCAACAAGATACTGCCGTTGCTGCGTTAGAC AGCGGATACAGTGAATACTGCGGCGAGATATCCCCGTTTAAATCCTATGCTGCAATATCGGGTGACTATATAACTATAGC CGCAAACTCCACAGTAAATGGAGACCTCGCTGCACAAGGGTACGTTACTATCGGTGCTAATTCTGTAGTTCACAACATCT ATGCTGGCGCTGCTGTGACCACAGGTGATGGGTCTATCGTTGAAAACACCTTTTCAGGTGATGCCACTACTATCGCAGCT AACGCTATTGCCCAAAATATCTATGCCGGAGCCGCCATTACCGTAGGCGCGGATGGTGATGTCCAGGCGGTCTATGCTGG CGCAGCCATCACCTTGGGCGCGAACGCTTCGACGAATGGCGTTTTAGCCGAGGATGCCAACTCAGATGACTATGTTGAAG CGGGCGATATACATAATGCTGGTAATATGACAGACATGATGGCGCTGATAGTGGACACACAGTCCGCTTTATTTGCCCTC GAGCCATCCCCTGAAAATGGACCATTACCTACCACTATGGGAACACGCATGTTAGCGCCTGGTGTGTGGGAAGGCAGTGC CCTGAGTATAACTGCAAGCTCAACCATTACCTTTGATGCGGATGTGTCTACTGATAATGAGGACCACGTTTGGGTTATTA ATCTTAGTGATGCGCTAACGGTGGGTGCGTCGACTAATTTCGAGATAATTGGTTTGGATGACACCGATACCGCTACTATC ATTTGGAATGTAGGCGCTGCACTCACCATGGGTGCAGGCACCTCTTTCCGTGGTACCGCATTTGTAGTGGGGCCCATTAC CGCGGCGACTTCATCGGTTAGTTGTGGTAACTTGTATGCAAGGGGCCTCATTAGTATCGGTAGCATTGGTGTCGATAGTG CAGGTAATGCAGTCACTTGCGAAAATTATGATGCCGTCTTCACTTATCTGGGGGCACTCAATTAA
Upstream 100 bases:
>100_bases CTGCTTCGTTATCTGATGGGCTGACGTTCACTTTAGCACTACGGCAAAAAATATTATTGGATTTGGCTCAATAATAAGTT CAAAAAGAACCGGAAAATAT
Downstream 100 bases:
>100_bases TTAGCCATCATTATGCACCGTAATAGGTGCAATTTCTCAGAGTAAATGGTCGGTTGTTATAGCCCGGCCATTTTTTTGCC CAATAAAAGTAATAAACAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MKKHKGFVLIPILIITTISAMLAFSQLSDNRLQERVAGNQQKEISARLAAEKGIFKAFNDIKVQSDLGQTNDQIISALID SGKVDLSARESYSFPSDNNGASPEATIITLVSKGEFSGATAYLKAVIKIIDGPSGLGKTVSYCSIYYYYPQQDTAVAALD SGYSEYCGEISPFKSYAAISGDYITIAANSTVNGDLAAQGYVTIGANSVVHNIYAGAAVTTGDGSIVENTFSGDATTIAA NAIAQNIYAGAAITVGADGDVQAVYAGAAITLGANASTNGVLAEDANSDDYVEAGDIHNAGNMTDMMALIVDTQSALFAL EPSPENGPLPTTMGTRMLAPGVWEGSALSITASSTITFDADVSTDNEDHVWVINLSDALTVGASTNFEIIGLDDTDTATI IWNVGAALTMGAGTSFRGTAFVVGPITAATSSVSCGNLYARGLISIGSIGVDSAGNAVTCENYDAVFTYLGALN
Sequences:
>Translated_474_residues MKKHKGFVLIPILIITTISAMLAFSQLSDNRLQERVAGNQQKEISARLAAEKGIFKAFNDIKVQSDLGQTNDQIISALID SGKVDLSARESYSFPSDNNGASPEATIITLVSKGEFSGATAYLKAVIKIIDGPSGLGKTVSYCSIYYYYPQQDTAVAALD SGYSEYCGEISPFKSYAAISGDYITIAANSTVNGDLAAQGYVTIGANSVVHNIYAGAAVTTGDGSIVENTFSGDATTIAA NAIAQNIYAGAAITVGADGDVQAVYAGAAITLGANASTNGVLAEDANSDDYVEAGDIHNAGNMTDMMALIVDTQSALFAL EPSPENGPLPTTMGTRMLAPGVWEGSALSITASSTITFDADVSTDNEDHVWVINLSDALTVGASTNFEIIGLDDTDTATI IWNVGAALTMGAGTSFRGTAFVVGPITAATSSVSCGNLYARGLISIGSIGVDSAGNAVTCENYDAVFTYLGALN >Mature_474_residues MKKHKGFVLIPILIITTISAMLAFSQLSDNRLQERVAGNQQKEISARLAAEKGIFKAFNDIKVQSDLGQTNDQIISALID SGKVDLSARESYSFPSDNNGASPEATIITLVSKGEFSGATAYLKAVIKIIDGPSGLGKTVSYCSIYYYYPQQDTAVAALD SGYSEYCGEISPFKSYAAISGDYITIAANSTVNGDLAAQGYVTIGANSVVHNIYAGAAVTTGDGSIVENTFSGDATTIAA NAIAQNIYAGAAITVGADGDVQAVYAGAAITLGANASTNGVLAEDANSDDYVEAGDIHNAGNMTDMMALIVDTQSALFAL EPSPENGPLPTTMGTRMLAPGVWEGSALSITASSTITFDADVSTDNEDHVWVINLSDALTVGASTNFEIIGLDDTDTATI IWNVGAALTMGAGTSFRGTAFVVGPITAATSSVSCGNLYARGLISIGSIGVDSAGNAVTCENYDAVFTYLGALN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48880; Mature: 48880
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKHKGFVLIPILIITTISAMLAFSQLSDNRLQERVAGNQQKEISARLAAEKGIFKAFND CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC IKVQSDLGQTNDQIISALIDSGKVDLSARESYSFPSDNNGASPEATIITLVSKGEFSGAT EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH AYLKAVIKIIDGPSGLGKTVSYCSIYYYYPQQDTAVAALDSGYSEYCGEISPFKSYAAIS HHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHCCCCCCCHHHHEEC GDYITIAANSTVNGDLAAQGYVTIGANSVVHNIYAGAAVTTGDGSIVENTFSGDATTIAA CCEEEEEECCCCCCCEEECCEEEECCCHHHHHHHCCCEEECCCCCEEEEECCCCCCEEEH NAIAQNIYAGAAITVGADGDVQAVYAGAAITLGANASTNGVLAEDANSDDYVEAGDIHNA HHHHHHHHCCEEEEECCCCCEEEEEECEEEEECCCCCCCCEEEECCCCCCCEECCCCCCC GNMTDMMALIVDTQSALFALEPSPENGPLPTTMGTRMLAPGVWEGSALSITASSTITFDA CCHHHEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCEEEEEE DVSTDNEDHVWVINLSDALTVGASTNFEIIGLDDTDTATIIWNVGAALTMGAGTSFRGTA CCCCCCCCEEEEEECCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCCCCE FVVGPITAATSSVSCGNLYARGLISIGSIGVDSAGNAVTCENYDAVFTYLGALN EEEECHHHCCCCCCCCCHHHHHHEEECCCCCCCCCCEEEECCCHHHHHHHHCCC >Mature Secondary Structure MKKHKGFVLIPILIITTISAMLAFSQLSDNRLQERVAGNQQKEISARLAAEKGIFKAFND CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC IKVQSDLGQTNDQIISALIDSGKVDLSARESYSFPSDNNGASPEATIITLVSKGEFSGAT EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH AYLKAVIKIIDGPSGLGKTVSYCSIYYYYPQQDTAVAALDSGYSEYCGEISPFKSYAAIS HHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHCCCCCCCHHHHEEC GDYITIAANSTVNGDLAAQGYVTIGANSVVHNIYAGAAVTTGDGSIVENTFSGDATTIAA CCEEEEEECCCCCCCEEECCEEEECCCHHHHHHHCCCEEECCCCCEEEEECCCCCCEEEH NAIAQNIYAGAAITVGADGDVQAVYAGAAITLGANASTNGVLAEDANSDDYVEAGDIHNA HHHHHHHHCCEEEEECCCCCEEEEEECEEEEECCCCCCCCEEEECCCCCCCEECCCCCCC GNMTDMMALIVDTQSALFALEPSPENGPLPTTMGTRMLAPGVWEGSALSITASSTITFDA CCHHHEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCEEEEEE DVSTDNEDHVWVINLSDALTVGASTNFEIIGLDDTDTATIIWNVGAALTMGAGTSFRGTA CCCCCCCCEEEEEECCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCCCCE FVVGPITAATSSVSCGNLYARGLISIGSIGVDSAGNAVTCENYDAVFTYLGALN EEEECHHHCCCCCCCCCHHHHHHEEECCCCCCCCCCEEEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA