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The map label for this gene is yeeY [H]

Identifier: 119946853

GI number: 119946853

Start: 4006057

End: 4006962

Strand: Direct

Name: yeeY [H]

Synonym: Ping_3247

Alternate gene names: 119946853

Gene position: 4006057-4006962 (Clockwise)

Preceding gene: 119946852

Following gene: 119946862

Centisome position: 87.86

GC content: 47.13

Gene sequence:

>906_bases
ATGCAGCGGTCAACCATCACCCTTGAAGCCATCACAGTATTAGATGCAATTGAAAAACGCGGCAGTTATGCCGCTGCGGC
AGAGCAGCTTAATAAGGTTCCCTCGGCACTCTCCTATATAGTGCAAAAATTAGAAGATCAGCTGCAGGTCACCATCTTCC
AAAAACAGGGCAGGCGTTCAGTACTCACCCCGGCGGGTAAAAACCTGCTTAACGAGGGACGCGTGATCCTTGAAGCCGTT
GAGCGACTCACCGTCAAAACGCAAACCATCGCCAATGGCTGGGAGCCCAAGTTAAATATTGCGATCGATTCTATTTTACA
AACTACGGTTATTTTTTCTGTGGTTAACGATTTTTTAACGGCCTGTCCAAATGTGGAAATGGACATCAGCGAAGAGATTT
TAAACGGTGCCTGGGAGGCATTAGCGGAGGATAAAATAGATATGATTATCGGTGTTCCGGGGCCGGCTCCCAAACAGAAA
GGCATACAAACGCTGCATCTCTGTGATTTTGAACCTGTTTTTGCCGTCAGTCCAACTCACCCCTTAGCCAAACAAGCGCA
GCCCTTAAGCAATGCATTGATTGCCGAGTACCGTGCGGTGGTTGCCCACGATACGGCGCGCAACTGGATAGCGCAGACGC
AATCGGTGATCAGTGAAGATAAGTATTTTTATGTGCCCAGTATGGACTATAAAATCAGGGCGCAAATAGCGGGTATCGGT
TGCGGGTTTTTACCCCGTTGTCGTATTCAGGAATTTTTACAAAACGGCCAGTTGCTTGAATTGCAGATAACCCCCACCCG
GCCTGCGGTTCCCTTATATTTAGCCTGGAAAGTGGTTAATCAGGGTAAAGCCTTAAAAATGCTTCGTGAGATGCTGATAG
CCAATAAAGCATTGATTAAATGTTAA

Upstream 100 bases:

>100_bases
ATTCTTATTTAATAAGCGCTAAAATCCAATCCATCTGTTCAAATTAGTTGAACAATAAACTTCTTCCCAACTACTTCTTA
CCCACTAAAAGGAGCCTACT

Downstream 100 bases:

>100_bases
CAAGGCCTGATCACAGGCCTTGTTAATTTACACTTAGCTGCTGGTATTATTAAGATTAGCAGCCGTTAACCCGTCGTCAT
ATTACCCACCGCATCAATTG

Product: transcriptional regulator, substrate-binding of LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQRSTITLEAITVLDAIEKRGSYAAAAEQLNKVPSALSYIVQKLEDQLQVTIFQKQGRRSVLTPAGKNLLNEGRVILEAV
ERLTVKTQTIANGWEPKLNIAIDSILQTTVIFSVVNDFLTACPNVEMDISEEILNGAWEALAEDKIDMIIGVPGPAPKQK
GIQTLHLCDFEPVFAVSPTHPLAKQAQPLSNALIAEYRAVVAHDTARNWIAQTQSVISEDKYFYVPSMDYKIRAQIAGIG
CGFLPRCRIQEFLQNGQLLELQITPTRPAVPLYLAWKVVNQGKALKMLREMLIANKALIKC

Sequences:

>Translated_301_residues
MQRSTITLEAITVLDAIEKRGSYAAAAEQLNKVPSALSYIVQKLEDQLQVTIFQKQGRRSVLTPAGKNLLNEGRVILEAV
ERLTVKTQTIANGWEPKLNIAIDSILQTTVIFSVVNDFLTACPNVEMDISEEILNGAWEALAEDKIDMIIGVPGPAPKQK
GIQTLHLCDFEPVFAVSPTHPLAKQAQPLSNALIAEYRAVVAHDTARNWIAQTQSVISEDKYFYVPSMDYKIRAQIAGIG
CGFLPRCRIQEFLQNGQLLELQITPTRPAVPLYLAWKVVNQGKALKMLREMLIANKALIKC
>Mature_301_residues
MQRSTITLEAITVLDAIEKRGSYAAAAEQLNKVPSALSYIVQKLEDQLQVTIFQKQGRRSVLTPAGKNLLNEGRVILEAV
ERLTVKTQTIANGWEPKLNIAIDSILQTTVIFSVVNDFLTACPNVEMDISEEILNGAWEALAEDKIDMIIGVPGPAPKQK
GIQTLHLCDFEPVFAVSPTHPLAKQAQPLSNALIAEYRAVVAHDTARNWIAQTQSVISEDKYFYVPSMDYKIRAQIAGIG
CGFLPRCRIQEFLQNGQLLELQITPTRPAVPLYLAWKVVNQGKALKMLREMLIANKALIKC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=291, Percent_Identity=34.3642611683849, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1789492, Length=279, Percent_Identity=34.4086021505376, Blast_Score=180, Evalue=8e-47,
Organism=Escherichia coli, GI1787949, Length=293, Percent_Identity=29.3515358361775, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1786713, Length=279, Percent_Identity=31.1827956989247, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1786508, Length=299, Percent_Identity=25.0836120401338, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33363; Mature: 33363

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSTITLEAITVLDAIEKRGSYAAAAEQLNKVPSALSYIVQKLEDQLQVTIFQKQGRRS
CCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHCCCCC
VLTPAGKNLLNEGRVILEAVERLTVKTQTIANGWEPKLNIAIDSILQTTVIFSVVNDFLT
CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ACPNVEMDISEEILNGAWEALAEDKIDMIIGVPGPAPKQKGIQTLHLCDFEPVFAVSPTH
HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCEEEEECCCCEEEECCCC
PLAKQAQPLSNALIAEYRAVVAHDTARNWIAQTQSVISEDKYFYVPSMDYKIRAQIAGIG
CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEECC
CGFLPRCRIQEFLQNGQLLELQITPTRPAVPLYLAWKVVNQGKALKMLREMLIANKALIK
CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHC
C
C
>Mature Secondary Structure
MQRSTITLEAITVLDAIEKRGSYAAAAEQLNKVPSALSYIVQKLEDQLQVTIFQKQGRRS
CCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHCCCCC
VLTPAGKNLLNEGRVILEAVERLTVKTQTIANGWEPKLNIAIDSILQTTVIFSVVNDFLT
CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ACPNVEMDISEEILNGAWEALAEDKIDMIIGVPGPAPKQKGIQTLHLCDFEPVFAVSPTH
HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCEEEEECCCCEEEECCCC
PLAKQAQPLSNALIAEYRAVVAHDTARNWIAQTQSVISEDKYFYVPSMDYKIRAQIAGIG
CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEECC
CGFLPRCRIQEFLQNGQLLELQITPTRPAVPLYLAWKVVNQGKALKMLREMLIANKALIK
CCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHC
C
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]