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The map label for this gene is secB

Identifier: 119946814

GI number: 119946814

Start: 3963865

End: 3964332

Strand: Reverse

Name: secB

Synonym: Ping_3208

Alternate gene names: 119946814

Gene position: 3964332-3963865 (Counterclockwise)

Preceding gene: 119946815

Following gene: 119946813

Centisome position: 86.94

GC content: 36.97

Gene sequence:

>468_bases
ATGGCAGAACAACAAGCTCAACCAGAACAAGTAGAATTCAATATCCAACGTGTCTATGTAAAAGATATTTCTTTTGAATG
TCCAGGGTCACCAAACATTTTTAAAAAAGAGTGGTCACCTGAGGTATCAATGGATATTGATACAAAAAGCCAGAAATTAG
AAGATAATGTCTTTGAAGTGGTTTTGACATTAACAACCACTGCAAAGGTTGGAGAAGAGCTTGCATTTTTATGTGAAGTT
CAACAAGCGGGTATTTTCTCCGTTGGAAATTTAGAAGGCGAGCAAATGGCGCATTGTTTGAATGCATTTTGTCCTAATAT
TTTATTCCCTTATGCACGTGAAACAGTGTCAAGCCTGGTTACCCGTGGTACTTTCCCGCAGCTAAACCTCGCACCGGTAA
ATTTTGATGCATTATTTCAACAGGCTGTATTAAGAAAACAATCAGAAGAAGCTAAATTAAATTCTTAA

Upstream 100 bases:

>100_bases
TTGTTAAGCCAATAATCTAGCCGGCAAGCATTAAACTGCGAGCAATTAAGACTCAAATAATTAATATTAAAATAAAATAA
GATAAATTTAAGGGATTATA

Downstream 100 bases:

>100_bases
TAAATTCCTGAGCAGTTAAACCTACTTTAGGTGTTGATAACGGCTTAACTTTAAGTGAAGTCGGTATTGCAACGGTCTGT
ATTACGTAAACAAGCTAAAT

Product: protein-export protein chaperone SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAEQQAQPEQVEFNIQRVYVKDISFECPGSPNIFKKEWSPEVSMDIDTKSQKLEDNVFEVVLTLTTTAKVGEELAFLCEV
QQAGIFSVGNLEGEQMAHCLNAFCPNILFPYARETVSSLVTRGTFPQLNLAPVNFDALFQQAVLRKQSEEAKLNS

Sequences:

>Translated_155_residues
MAEQQAQPEQVEFNIQRVYVKDISFECPGSPNIFKKEWSPEVSMDIDTKSQKLEDNVFEVVLTLTTTAKVGEELAFLCEV
QQAGIFSVGNLEGEQMAHCLNAFCPNILFPYARETVSSLVTRGTFPQLNLAPVNFDALFQQAVLRKQSEEAKLNS
>Mature_154_residues
AEQQAQPEQVEFNIQRVYVKDISFECPGSPNIFKKEWSPEVSMDIDTKSQKLEDNVFEVVLTLTTTAKVGEELAFLCEVQ
QAGIFSVGNLEGEQMAHCLNAFCPNILFPYARETVSSLVTRGTFPQLNLAPVNFDALFQQAVLRKQSEEAKLNS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=142, Percent_Identity=64.0845070422535, Blast_Score=207, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_PSYIN (A1SZI0)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944494.1
- ProteinModelPortal:   A1SZI0
- SMR:   A1SZI0
- STRING:   A1SZI0
- GeneID:   4624817
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3208
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   A1SZI0
- BioCyc:   PING357804:PING_3208-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17380; Mature: 17249

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQQAQPEQVEFNIQRVYVKDISFECPGSPNIFKKEWSPEVSMDIDTKSQKLEDNVFEV
CCCCCCCCCCEEEEEEEEEEEECCEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
VLTLTTTAKVGEELAFLCEVQQAGIFSVGNLEGEQMAHCLNAFCPNILFPYARETVSSLV
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
TRGTFPQLNLAPVNFDALFQQAVLRKQSEEAKLNS
HCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AEQQAQPEQVEFNIQRVYVKDISFECPGSPNIFKKEWSPEVSMDIDTKSQKLEDNVFEV
CCCCCCCCCEEEEEEEEEEEECCEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
VLTLTTTAKVGEELAFLCEVQQAGIFSVGNLEGEQMAHCLNAFCPNILFPYARETVSSLV
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
TRGTFPQLNLAPVNFDALFQQAVLRKQSEEAKLNS
HCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA