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The map label for this gene is ubiD

Identifier: 119946795

GI number: 119946795

Start: 3936607

End: 3938076

Strand: Reverse

Name: ubiD

Synonym: Ping_3188

Alternate gene names: 119946795

Gene position: 3938076-3936607 (Counterclockwise)

Preceding gene: 119946796

Following gene: 119946794

Centisome position: 86.37

GC content: 43.27

Gene sequence:

>1470_bases
ATGAAATTTGATGATTTACGTGACTTTATCGGGCAGCTCGAGGAGCGGGGACTTTTAAAACGTATCAAACAAGAGATAGA
TCCTCACTTAGAAATGACGGAAATCTCAGATCGTACTTTACGTGCAGGTGGGCCCGCTCTTTTATTTGAGAATCCAAAAG
GTTTTGATACGCCCGTTCTGACTAACTTATTTGGTACAACTCAGCGTGTGGCATTGGCGATGGGTCAGGATGACGTTGCA
GCTTTAAAAGAGGTCGGCAAGTGGTTGGCTTATTTAAAAGAGCCTGAGCCACCCAAAGGCATTAAATCATTATGGGAAAA
ACTGCCAATATTTAAGCAAGTATTAAATATGCCGACCAAAAAAGTGCGCTCACCGGCTTGCCAGCAGGTAATTATGGAAG
GTGATGACGTTGATTTAACCAAACTGCCTATTATGACTTGTTGGCCGGGAGATGTTGCTCCTTTGATTACCTGGGGTTTA
ACCATTACTAAAGGTCCCTATAAAAAGCGTCAAAATTTAGGAATTTATCGCCAGCAGTTGTTAGGGAAAAATAAGATAAT
AATGCGCTGGTTATCGCATCGCGGCGGGGCGCTTGACTTTCGAGAGTGGCAAGAAGTTAATCCGGGTAAACCTTTTCCTG
TTTCGGTGGCCTTGGGTGCTGATCCGGCCACTATTTTAGGGGCGGTAACCCCGATCCCTGATACTTTGTCAGAATATGCC
TTTGCGGGTTTATTACGTGGCTCGCGCACTAAAGTAGCAAAAAGCATAAGTAATGATCTTGATATTCCAGCTACTGCCGA
AATAATATTAGAAGGTTATCTGCAGCCTGGAGAGGAAGCACCAGAGGGCCCTTACGGTGACCATACGGGTTATTATAATG
AAGTTGACGATTTTCAAGTAATGACAGTGACCCATGTAACGCATCGCGAAAATCCTATTTACCTCAGCACTTATACTGGA
CGTCCGCCCGATGAACCTTCAATTTTAGGTGTCGCGCTTAATGAAATCTTTGTCCCTATTTTACAAAAGCAGTTTCCCGA
AATTGTCGATTTTTATCTGCCACCGGAGGGCTGTTCATACCGTATGGCGGTTGTTTCCATTAAAAAAAGTTATCCGGGTC
ATGCCAAGCGAGTGATGTTCGGCATTTGGTCTTTCCTACGTCAATTTATGTACACCAAGTTTATTATTGTTTGTGATGAT
GATGTCAATGTGCGTGACTGGAATGATGTGATTTGGGCGATTACAACCCGTATGGATCCATCTCGAGATACCACTTTGGT
CGATAATACACCTATTGACTACTTGGACTTTGCTTCTCCCGTTTCAGGCTTAGGCTCAAAAATGGGCATGGATGCGACCA
ATAAATGGGCTGGAGAGTCGGATCGGGAATGGGGGACACCTATTTTAATGGATAAAAAAGTAAAAGAAAAAATAGATGAT
CTTTGGCAAGACTTAGATATCCTGTCATAA

Upstream 100 bases:

>100_bases
GAAAAACCAAAAAGCAAAATAATTAGCTTTATTGTGGAAAAAACGCTACTGAAAAGTAGCGTTTTTTTTTGTTTTTTTTC
CATTATAAATTGGATCCCTT

Downstream 100 bases:

>100_bases
TCTTAATGTTATTTTTTTGTTACATTCCTGTTTTTCTGGGACCTATTCTAAGAAGAGAAATTAATGCAACCTGTTACTTG
TAAGATCACTTCCATCGAAA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MKFDDLRDFIGQLEERGLLKRIKQEIDPHLEMTEISDRTLRAGGPALLFENPKGFDTPVLTNLFGTTQRVALAMGQDDVA
ALKEVGKWLAYLKEPEPPKGIKSLWEKLPIFKQVLNMPTKKVRSPACQQVIMEGDDVDLTKLPIMTCWPGDVAPLITWGL
TITKGPYKKRQNLGIYRQQLLGKNKIIMRWLSHRGGALDFREWQEVNPGKPFPVSVALGADPATILGAVTPIPDTLSEYA
FAGLLRGSRTKVAKSISNDLDIPATAEIILEGYLQPGEEAPEGPYGDHTGYYNEVDDFQVMTVTHVTHRENPIYLSTYTG
RPPDEPSILGVALNEIFVPILQKQFPEIVDFYLPPEGCSYRMAVVSIKKSYPGHAKRVMFGIWSFLRQFMYTKFIIVCDD
DVNVRDWNDVIWAITTRMDPSRDTTLVDNTPIDYLDFASPVSGLGSKMGMDATNKWAGESDREWGTPILMDKKVKEKIDD
LWQDLDILS

Sequences:

>Translated_489_residues
MKFDDLRDFIGQLEERGLLKRIKQEIDPHLEMTEISDRTLRAGGPALLFENPKGFDTPVLTNLFGTTQRVALAMGQDDVA
ALKEVGKWLAYLKEPEPPKGIKSLWEKLPIFKQVLNMPTKKVRSPACQQVIMEGDDVDLTKLPIMTCWPGDVAPLITWGL
TITKGPYKKRQNLGIYRQQLLGKNKIIMRWLSHRGGALDFREWQEVNPGKPFPVSVALGADPATILGAVTPIPDTLSEYA
FAGLLRGSRTKVAKSISNDLDIPATAEIILEGYLQPGEEAPEGPYGDHTGYYNEVDDFQVMTVTHVTHRENPIYLSTYTG
RPPDEPSILGVALNEIFVPILQKQFPEIVDFYLPPEGCSYRMAVVSIKKSYPGHAKRVMFGIWSFLRQFMYTKFIIVCDD
DVNVRDWNDVIWAITTRMDPSRDTTLVDNTPIDYLDFASPVSGLGSKMGMDATNKWAGESDREWGTPILMDKKVKEKIDD
LWQDLDILS
>Mature_489_residues
MKFDDLRDFIGQLEERGLLKRIKQEIDPHLEMTEISDRTLRAGGPALLFENPKGFDTPVLTNLFGTTQRVALAMGQDDVA
ALKEVGKWLAYLKEPEPPKGIKSLWEKLPIFKQVLNMPTKKVRSPACQQVIMEGDDVDLTKLPIMTCWPGDVAPLITWGL
TITKGPYKKRQNLGIYRQQLLGKNKIIMRWLSHRGGALDFREWQEVNPGKPFPVSVALGADPATILGAVTPIPDTLSEYA
FAGLLRGSRTKVAKSISNDLDIPATAEIILEGYLQPGEEAPEGPYGDHTGYYNEVDDFQVMTVTHVTHRENPIYLSTYTG
RPPDEPSILGVALNEIFVPILQKQFPEIVDFYLPPEGCSYRMAVVSIKKSYPGHAKRVMFGIWSFLRQFMYTKFIIVCDD
DVNVRDWNDVIWAITTRMDPSRDTTLVDNTPIDYLDFASPVSGLGSKMGMDATNKWAGESDREWGTPILMDKKVKEKIDD
LWQDLDILS

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=489, Percent_Identity=76.4826175869121, Blast_Score=806, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=447, Percent_Identity=26.8456375838926, Blast_Score=133, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_PSYIN (A1SZG1)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944475.1
- ProteinModelPortal:   A1SZG1
- SMR:   A1SZG1
- STRING:   A1SZG1
- GeneID:   4624793
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3188
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   A1SZG1
- BioCyc:   PING357804:PING_3188-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55080; Mature: 55080

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDDLRDFIGQLEERGLLKRIKQEIDPHLEMTEISDRTLRAGGPALLFENPKGFDTPVL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCHHH
TNLFGTTQRVALAMGQDDVAALKEVGKWLAYLKEPEPPKGIKSLWEKLPIFKQVLNMPTK
HHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHH
KVRSPACQQVIMEGDDVDLTKLPIMTCWPGDVAPLITWGLTITKGPYKKRQNLGIYRQQL
HHCCHHHHHHHHCCCCCCEEECCEEEECCCCHHHHHHHCEEEECCCCHHHHCCHHHHHHH
LGKNKIIMRWLSHRGGALDFREWQEVNPGKPFPVSVALGADPATILGAVTPIPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHHHHHH
FAGLLRGSRTKVAKSISNDLDIPATAEIILEGYLQPGEEAPEGPYGDHTGYYNEVDDFQV
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
MTVTHVTHRENPIYLSTYTGRPPDEPSILGVALNEIFVPILQKQFPEIVDFYLPPEGCSY
EEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVSIKKSYPGHAKRVMFGIWSFLRQFMYTKFIIVCDDDVNVRDWNDVIWAITTRMDP
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
SRDTTLVDNTPIDYLDFASPVSGLGSKMGMDATNKWAGESDREWGTPILMDKKVKEKIDD
CCCCEEECCCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHH
LWQDLDILS
HHHHHHCCC
>Mature Secondary Structure
MKFDDLRDFIGQLEERGLLKRIKQEIDPHLEMTEISDRTLRAGGPALLFENPKGFDTPVL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCHHH
TNLFGTTQRVALAMGQDDVAALKEVGKWLAYLKEPEPPKGIKSLWEKLPIFKQVLNMPTK
HHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHH
KVRSPACQQVIMEGDDVDLTKLPIMTCWPGDVAPLITWGLTITKGPYKKRQNLGIYRQQL
HHCCHHHHHHHHCCCCCCEEECCEEEECCCCHHHHHHHCEEEECCCCHHHHCCHHHHHHH
LGKNKIIMRWLSHRGGALDFREWQEVNPGKPFPVSVALGADPATILGAVTPIPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHHHHHH
FAGLLRGSRTKVAKSISNDLDIPATAEIILEGYLQPGEEAPEGPYGDHTGYYNEVDDFQV
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
MTVTHVTHRENPIYLSTYTGRPPDEPSILGVALNEIFVPILQKQFPEIVDFYLPPEGCSY
EEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVSIKKSYPGHAKRVMFGIWSFLRQFMYTKFIIVCDDDVNVRDWNDVIWAITTRMDP
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
SRDTTLVDNTPIDYLDFASPVSGLGSKMGMDATNKWAGESDREWGTPILMDKKVKEKIDD
CCCCEEECCCCCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHH
LWQDLDILS
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA