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The map label for this gene is yurM [H]

Identifier: 119946778

GI number: 119946778

Start: 3903492

End: 3904292

Strand: Reverse

Name: yurM [H]

Synonym: Ping_3171

Alternate gene names: 119946778

Gene position: 3904292-3903492 (Counterclockwise)

Preceding gene: 119946779

Following gene: 119946777

Centisome position: 85.63

GC content: 42.82

Gene sequence:

>801_bases
ATGAATAAGAAGAAAACACTGGGGCTTAGCGTATATATTATATTCTTGCTATTGCCTATCTACTGGCTGTTAATGATGTC
GTTTAAGGATAATTCAGAGATATTAGGTGGCTTAAGTTTTTGGCCTGATACTTTCACCTTTGACAACTACATGACTATCT
TTACCGATCCTACATGGTATACGGGTTACCTTAACTCTATCTATTATGTAGCACTGAATATGATTATTACGTTAACGGTG
GCATTACCTGCGGCCTATGCCTTTTCACGTTATAACTTTATGGGCGACAAGCATCTGTTTTTCTGGTTATTGACCAACAG
AATGTCACCACCTGCGGTATTTTTGCTGCCGTTTTTCCAGCTATATTCATCGGTGGGATTGTTTGATACTCACATCGGTG
TCGCCCTCGCGCACTGTTTGTTTAATGTGCCCTTAGCGGTCTGGATTCTGGAAGGTTTTATGTCCGGTGTGCCGCGTGAG
ATTGACGAAACTGCCTATATCGACGGTTACACTTTTCCTAAGTTTTTTGTGAAGATATTTCTTCCCTTAATTCGCTCCGG
AATCGGTGTAACAGCCTTCTTTATCTTTATGTTCAGTTGGGTGGAATTATTGTTAGCAAGAACATTGACATCAGTTGACG
CTAAACCTATTGCAGCGGTAATGACCCGTACGGTCAGTGCATCGGGTATTGACTGGGGAGTCTTAGCAGCGGCGGGTGTA
CTGACTATTCTACCTGGCGTAGTGGTTATTTGGTTTGTTAGAAATCACGTGGCGAAGGGCTTTGCTCTTGGCCGTGTATA
G

Upstream 100 bases:

>100_bases
TCTCGATCATTTATTTCTTGATCATTCTATTAGTCAGCTGGCTGTTCTATACCGCAATGACCCATGGCGATAGTAAATAA
TTAACGCAAAGGATGTACTT

Downstream 100 bases:

>100_bases
GAGAAAAATATGGAATGGATGGCTTGGACTACGCCTTCGGCGCTGTTTTTTGTGGGTATTGGCTCTATTATATTAACCAT
GGTTTGTTGGGAAATATTAA

Product: ABC sugar (glycerol) transporter binding protein inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNKKKTLGLSVYIIFLLLPIYWLLMMSFKDNSEILGGLSFWPDTFTFDNYMTIFTDPTWYTGYLNSIYYVALNMIITLTV
ALPAAYAFSRYNFMGDKHLFFWLLTNRMSPPAVFLLPFFQLYSSVGLFDTHIGVALAHCLFNVPLAVWILEGFMSGVPRE
IDETAYIDGYTFPKFFVKIFLPLIRSGIGVTAFFIFMFSWVELLLARTLTSVDAKPIAAVMTRTVSASGIDWGVLAAAGV
LTILPGVVVIWFVRNHVAKGFALGRV

Sequences:

>Translated_266_residues
MNKKKTLGLSVYIIFLLLPIYWLLMMSFKDNSEILGGLSFWPDTFTFDNYMTIFTDPTWYTGYLNSIYYVALNMIITLTV
ALPAAYAFSRYNFMGDKHLFFWLLTNRMSPPAVFLLPFFQLYSSVGLFDTHIGVALAHCLFNVPLAVWILEGFMSGVPRE
IDETAYIDGYTFPKFFVKIFLPLIRSGIGVTAFFIFMFSWVELLLARTLTSVDAKPIAAVMTRTVSASGIDWGVLAAAGV
LTILPGVVVIWFVRNHVAKGFALGRV
>Mature_266_residues
MNKKKTLGLSVYIIFLLLPIYWLLMMSFKDNSEILGGLSFWPDTFTFDNYMTIFTDPTWYTGYLNSIYYVALNMIITLTV
ALPAAYAFSRYNFMGDKHLFFWLLTNRMSPPAVFLLPFFQLYSSVGLFDTHIGVALAHCLFNVPLAVWILEGFMSGVPRE
IDETAYIDGYTFPKFFVKIFLPLIRSGIGVTAFFIFMFSWVELLLARTLTSVDAKPIAAVMTRTVSASGIDWGVLAAAGV
LTILPGVVVIWFVRNHVAKGFALGRV

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=276, Percent_Identity=25.7246376811594, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790464, Length=209, Percent_Identity=26.7942583732057, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=23.9700374531835, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30011; Mature: 30011

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKKTLGLSVYIIFLLLPIYWLLMMSFKDNSEILGGLSFWPDTFTFDNYMTIFTDPTWY
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCCCCEECCEEEEEECCCCH
TGYLNSIYYVALNMIITLTVALPAAYAFSRYNFMGDKHLFFWLLTNRMSPPAVFLLPFFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCHHHHHHHHH
LYSSVGLFDTHIGVALAHCLFNVPLAVWILEGFMSGVPREIDETAYIDGYTFPKFFVKIF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH
LPLIRSGIGVTAFFIFMFSWVELLLARTLTSVDAKPIAAVMTRTVSASGIDWGVLAAAGV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LTILPGVVVIWFVRNHVAKGFALGRV
HHHHHHHHHHHHHHHHHHHCHHCCCC
>Mature Secondary Structure
MNKKKTLGLSVYIIFLLLPIYWLLMMSFKDNSEILGGLSFWPDTFTFDNYMTIFTDPTWY
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCCCCEECCEEEEEECCCCH
TGYLNSIYYVALNMIITLTVALPAAYAFSRYNFMGDKHLFFWLLTNRMSPPAVFLLPFFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCHHHHHHHHH
LYSSVGLFDTHIGVALAHCLFNVPLAVWILEGFMSGVPREIDETAYIDGYTFPKFFVKIF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH
LPLIRSGIGVTAFFIFMFSWVELLLARTLTSVDAKPIAAVMTRTVSASGIDWGVLAAAGV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LTILPGVVVIWFVRNHVAKGFALGRV
HHHHHHHHHHHHHHHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]